1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgatctgctcctcctgcgtatttgaaaaaaaaatagctaattattgtccattcctgattgtagcttcatcctgaactgcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGGGCCATCAATGCTGCTCATGTCGAGGCTGAAAGTGCGGAGAACGGCATCG
species | Zea mays |
transcript | GRMZM2G080375_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG GTGATTGACAAGTCGTTTGGATTCGACACTGCTGTGGAGGAGGCCCAGAGGEST: gi|33099629|gb|CF059589.1|CF059589
genomic: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCGgtacgatctg ... gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGG
EST: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG GTGATTGACAAGTCGTTTGGATTCGACACTGCTGTGGAGGAGGCCCAGAGGEST: gi|87153260|gb|DY398049.1|DY398049
genomic: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCGgtacgatctg ... gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGG
EST: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG GTGATTGACAAGTCGTTTGGATTCGACACTGCTGTGGAGGAGGCCCAGAGGEST: gi|211450005|gb|FL281917.1|FL281917
genomic: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCGgtacgatctg ... gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGG
EST: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG GTGATTGACAAGTCGTTTGGATTCGACACTGCTGTGGAGGAGGCCCAGAGGEST: gi|211450006|gb|FL281918.1|FL281918
genomic: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCGgtacgatctg ... gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGG
EST: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCG GTGATTGACAAGTCGTTTGGATTCGACACTGCTGTGGAGGAGGCCCAGAGG
genomic: TCAAGTGCTCTGTTGTCGGTGTCCCAAAGACTATTGATAACGACATCGCGgtacgatctg ... gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGG
atagctaattattgtccattcctgattgtagcttcatcctgaactgcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGGGCCATCAATGCTGCTCATGTCGAGGCTGAAAGTGCGGAGAACGGCATCG
tcctgat putative branch site (score: 3)
taattattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatctgctcctcctgcgtatttgaaaaaaaaatagctaattattgtccattcctgattgtagcttcatcctgaactgcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGGGCCATCAATGCTGCTCATGTCGAGGCTGAAAGTGCGGAGAACGGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA