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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttatctagcttttgtgttattgattattggtagcaccatgtgatggttatctagagggacctaggctaatggtttcttgggcctatatatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG

Basic information

species Zea mays
transcript GRMZM2G079468_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079468_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g56640.3 (Oryza sativa), 3'ss of exon 6
ttcttatctagct-tttgtgttattgattattggtagcaccatgtgatggttatctagagggacctaggc--taatggtttcttgggcctatatatttc--acagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG
      ||||||| ||||   | |  ||| |  |||  |||   |||    | ||||| || |   | ||  |||| | ||| |   | |  | |||||  ||||| |||||||||||||| ||  |||||||||   | |||||| ||||||||||||| |||||||||||||| ||
----cttctagctatttgaaatgtaaattgtgtgtaaaacc-catgacaaatttctagtggaatacatgcagtaattgcttcattctcttgaacatttcatacagTAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772397|gb|DR970332.1|DR970332
EST:     TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG                         TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: gi|76289273|gb|DV028841.1|DV028841
EST:     TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG                         TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: gi|148934464|gb|EC878503.2|EC878503
EST:     TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG                         TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: gi|74240416|gb|DT648330.1|DT648330
EST:     TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG                         TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttatctagagggacctaggctaatggtttcttgggcctatatatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG
                     ggctaat  putative branch site (score: 3)
                                         tatatatttca  TA-rich tract