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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgagttcaaattggtacattagtatcttcagaagttagcagatattttgcattaataaagtattcgctgcacatgcttatgtgacctttagGGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAG

Basic information

species Zea mays
transcript GRMZM2G079452_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079452_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g23790.2 (Oryza sativa), 3'ss of exon 6
gtgagttttgagttcaaa--ttggtacattagtatcttcagaagttagcagatattttgcatta-ataaagtattcg-ctgcacatgcttatgtgacctttagGGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAG
|| || ||||  ||||||   |||    ||  ||||||||||    |  |  |||||||||||| ||| | | || | |||||| || ||   ||  |   ||||||||||  | |||| |||||||||||||||||| || ||||||||||||||||| ||||| |||
gtaagctttggattcaaaacatggattgttgttatcttcagataccaata--tattttgcattacatagattgtttgactgcacttgtttccatggacac-agGGAAGTGTGACAGGCCTCAAGCCACGGCCAGTCCGTCCAGGAATGTTCCTTGAGACGGTTTCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774789|gb|DR972667.1|DR972667
EST:     GTGCTGATTCACATTCTGAACAGGAGAGTCTAACAGGAGTATTAGGAAGG                         GGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTT
genomic: GTGCTGATTCACATTCTGAACAGGAGAGTCTAACAGGAGTATTAGGAAGGgtgagttttg ... tgacctttagGGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagatattttgcattaataaagtattcgctgcacatgcttatgtgacctttagGGAAGTGTATCTGGCCACAAGCCACGGCCAGTCCGCCCTGGAATGTTCCTTGAGACTGTTTCCAAG
             cattaat  putative branch site (score: 3)
                                                ccttt  putative PPT
     atattttgcattaata  TA-rich tract