1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgatgtatattttaactcataaacatgtagttttacaagagttgtcgctatctttaatgatatgatgttgacatgttgtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTATGACTGATACATCGAACAAGATTAAGAAGGGGACAAAAGGAGATGTTT
species | Zea mays |
transcript | GRMZM2G079236_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTEST: gi|211295641|gb|FL337574.1|FL337574
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACT
EST: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTEST: gi|211103068|gb|FL309408.1|FL309408
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACT
EST: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTEST: gi|211440066|gb|FL316513.1|FL316513
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACT
EST: TTTATCTGGCTTACCTTCCATTGGCTCATGNCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTEST: gi|211485905|gb|FL317496.1|FL317496
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACT
EST: TTTATCTGGCTTACCTTCCATTGGCTCATNTCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTEST: gi|32846288|gb|CD985969.1|CD985969
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACT
EST: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAG ACTGTCATGCTAGCTTCTGGT
genomic: TTTATCTGGCTTACCTTCCATTGGCTCATGTCTTTGAACTAGCAGGAGAGgtgatgtata ... gtcaatccagACTGTCATGCTAGCTTCTGGT
ttacaagagttgtcgctatctttaatgatatgatgttgacatgttgtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTATGACTGATACATCGAACAAGATTAAGAAGGGGACAAAAGGAGATGTTT
tgttgac putative branch site (score: 3)
tatctttaatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgtatattttaactcataaacatgtagttttacaagagttgtcgctatctttaatgatatgatgttgacatgttgtcaatccagACTGTCATGCTAGCTTCTGGTACTGCCATTGGATATGGTTCAACATTGACTATGACTGATACATCGAACAAGATTAAGAAGGGGACAAAAGGAGATGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG