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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaccaccactgtttcatcagtatatatatactgaaactaatgctatatatatatatgttatctgcagtacgtattctctctaacaacaccggcccccttcaatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT

Basic information

species Zea mays
transcript GRMZM2G079127_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38688015|gb|CK145046.1|CK145046
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71332251|gb|DR803050.1|DR803050
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|110961621|gb|EE181673.1|EE181673
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71300369|gb|DR786249.1|DR786249
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71330476|gb|DR802003.1|DR802003
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|91053693|gb|EB164111.1|EB164111
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|50323474|gb|CO518600.1|CO518600
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTCCATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|74239733|gb|DT647647.1|DT647647
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|50330561|gb|CO525687.1|CO525687
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTCCATGGAAGAGACCAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|89760887|gb|DY689118.1|DY689118
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|86470695|gb|DY237065.1|DY237065
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|149016902|gb|EE154294.2|EE154294
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|89757507|gb|DY687077.1|DY687077
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|44901502|gb|CK828047.1|CK828047
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71759048|gb|DR956985.1|DR956985
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|86466036|gb|DY232409.1|DY232409
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|211148279|gb|FL467071.1|FL467071
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGMAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|110530888|gb|EE035072.1|EE035072
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|76011049|gb|DT938219.1|DT938219
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|88750180|gb|DY534321.1|DY534321
EST:     TTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTTCATGGAAGAGAACAAA
genomic: TTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148954453|gb|EC899877.2|EC899877
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|74236597|gb|DT644511.1|DT644511
EST:     AGACTGTTGTGCTTCTTTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71300939|gb|DR786498.1|DR786498
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148934685|gb|EC878733.2|EC878733
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|78115936|gb|DV534324.1|DV534324
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148943053|gb|EC888103.2|EC888103
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|50329273|gb|CO524399.1|CO524399
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|29946163|gb|CB816011.1|CB816011
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148997916|gb|EE035904.2|EE035904
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|50330890|gb|CO526016.1|CO526016
EST:     AGACTGTTGTGCTTCTTTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148944005|gb|EC889088.2|EC889088
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|76924865|gb|DV170168.1|DV170168
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|91873710|gb|EB403667.1|EB403667
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|149037205|gb|EE155291.2|EE155291
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|149023506|gb|EE154507.2|EE154507
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|38688052|gb|CK145083.1|CK145083
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|94479194|gb|EB708152.1|EB708152
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|71433831|gb|DR814881.1|DR814881
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|94479872|gb|EB708830.1|EB708830
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
EST: gi|148970948|gb|EE021755.2|EE021755
EST:     AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG                         GTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA
genomic: AGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 157

GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 122

GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 69

GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 90

GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAGgttaccacca ... caatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttatctgcagtacgtattctctctaacaacaccggcccccttcaatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT
                       ctctaac  putative branch site (score: 90)
                                      cccccttc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaccaccactgtttcatcagtatatatatactgaaactaatgctatatatatatatgttatctgcagtacgtattctctctaacaacaccggcccccttcaatctgcagGTGGAGGTTGCTCAAGAGAGGCTGAAGAGATGGTACATGGAAGAGAACAGAAGACTCCAGGGGTCCAGACGAAACCCTTAGGCCGGCCCTCAGCTCCACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC