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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcagtgaatacattcgacaaataaaatatgtgatggtgaaaggttgttgaacattgatgcctaaatcagttgatcgttttttttcctgtttttcacagTTTCCCGATTGATGAACAAATGAATATGAAATCTGTCGTGGAATACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCCTGCCTTCAG

Basic information

species Zea mays
transcript GRMZM2G079080_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079080_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 6
tagcagtgaatacattcgacaaataaaatatgtg-atggtgaaaggttgttgaacattgatgcctaaatcagttgatcg--ttttttttcctgtttttcacagTTTCCCGATTGATGAACAAATGAATATGAAATCTGTCGTGGAATACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCCTGCCTTCAG
    |   |||| |    |  ||  |   || |  ||  |  |     |||    | |      |   | |    || |   |  ||||  |  |||| |||||||||| || ||||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
---gaccaaatagaccaaattaactatcaatatccatatttcatatacgttagctactaggcattgtgttaagctatggaactgattttgtttgttttaacagTTTCCCAATCGATGACCAAATGAACATGAAATCTGTCGTAGAGTATTTCAAGGAAATGTATGGCTTCACCATTCAGCATCCCCATCTTCCCTGCCTTCAG

upper sequence: GRMZM2G079080_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 7
tagcagtgaatacattcgacaaataaaatatgtgatggtgaaaggttgttgaacattgatgcctaa-atcagttgatcgttttttttcctgtttttcacagTTTCCCGATTGATGAACAAATGAATATGAAATCTGTCGTGGAATACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCCTGCCTTCAG
     |||| |   ||   |    |       |  |  |   ||  |    | |  |  ||  |    | || | |     |  |    | ||||    || || ||  |||||||  |    | ||||||||| || || ||||||||| | || |||||||||||||| |||||  || |||| ||||| |||||||| 
-----gtgagt-tgtttctctttcaggtctcttcctactagcagtcttagaagcgatagtgttttccgttagctcactaaataatgatgtattttctttagGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAA

upper sequence: GRMZM2G079080_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 7
tagcagtgaatacattcgacaaataaaatatgtgatggtgaaaggttgttgaacattgatg--cctaaatcagttgatcgttttttttcctgtttttcacagTTTCCCGATTGATGAACAAATGAATATGAAATCTGTCGTGGAATACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCCTGCCTTCAG
     || | |   ||   |    |       |  |  ||  ||  |    |    |  ||    |  || || | |     |  |    ||||| |    |||||| | |||||||  |    | ||||||||| || || ||||||||| | || |||||||||||||| |||||  || |||| ||||| |||||||| 
-----gtaagt-tgtttctctttcaggtctcttcctactggcagtcttagaaggtatagtgattttccattagctcactaaataatgatgtgtttctttagGTTTCCTG-TTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgaacattgatgcctaaatcagttgatcgttttttttcctgtttttcacagTTTCCCGATTGATGAACAAATGAATATGAAATCTGTCGTGGAATACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCCTGCCTTCAG
                              tcgttttttttcctgt  CT-rich tract
                                 tttttttt  TA-rich tract