1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atatctggagtttgtttttgtttttcgaagaatctgatacgtggttatggtaatactatgcccatatgttgatcctgactgttttttgtgatgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGCAGTAGAAGCCGTAGCAAAAGTGACAGTAGAAGCCGTAGCCCAAGTCCC
species | Zea mays |
transcript | GRMZM2G078826_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATAATGGTAGCCGTGGCAG GTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGEST: gi|28361733|gb|CB240089.1|CB240089
genomic: TGATAATGGTAGCCGTGGCAGgtaaacttag ... atgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
EST: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAG GTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGEST: gi|7009376|gb|AW455641.1|AW455641
genomic: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAGgtaaacttag ... atgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
EST: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAG GTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGEST: gi|78179897|gb|DV550270.1|DV550270
genomic: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAGgtaaacttag ... atgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
EST: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAG GTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGEST: gi|60343923|gb|DN210896.1|DN210896
genomic: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAGgtaaacttag ... atgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
EST: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAG GTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
genomic: GAGAGTGGTCGCGGCAGTCGTGGAAGGGATGATAATGGTAGCCGTGGCAGgtaaacttag ... atgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCG
tatggtaatactatgcccatatgttgatcctgactgttttttgtgatgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGCAGTAGAAGCCGTAGCAAAAGTGACAGTAGAAGCCGTAGCCCAAGTCCC
tcctgac putative branch site (score: 2)
taatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatctggagtttgtttttgtttttcgaagaatctgatacgtggttatggtaatactatgcccatatgttgatcctgactgttttttgtgatgctaacagGTACGACCCTGGTGAAACCGATGGGCGATCTCGTAGGTCTACTAGAGGCCGCAGTAGAAGCCGTAGCAAAAGTGACAGTAGAAGCCGTAGCCCAAGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC