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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttacataattaaaagtttaaagaaaatgccatataggcatcccaattttcttatctctagttaatttttactctaattagcagtacgagtctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTCTTATGTTTTTCTGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAAT

Basic information

species Zea mays
transcript GRMZM2G078458_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 6
tttacataattaaaagtttaaagaaaatgccatataggcatcccaattttcttatct-ctagttaatttttactctaattagcagtacgagtctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTCTTATGTTTTTCTGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAAT
  | ||  ||  | |  | |   |   | |   | |    | |   ||   ||  || ||   |   |||||    | | ||||| |||| |||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||||||| ||  |||   | |||  | | |||||    ||   ||
-atgcaatatacacatatgatgcagggtccttcacatagttgctggttcagttccctgctttctttgttttatgtaactcagcagcacgactctatggcagGGCAAACTCAATATTCTGGACTCGAGCATTGAATATACCATTGCCTCGTTTTTATGTTTTTCCGGAATCACTAGACGAAAAGCGGGCCAACATTGGTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298470|gb|DR785213.1|DR785213
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|211047245|gb|FL354513.1|FL354513
EST:     CTCAATTGAAGTTTTGTTTGGAG-ACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTG-AGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|71766035|gb|DR963972.1|DR963972
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|78108131|gb|DV526549.1|DV526549
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|101383848|gb|EB813979.1|EB813979
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|71319933|gb|DR796728.1|DR796728
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|148973503|gb|EE024603.2|EE024603
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|74241324|gb|DT649238.1|DT649238
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
EST: gi|71330009|gb|DR801742.1|DR801742
EST:     CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTG                         GGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC
genomic: CTCAGTTGAAGTTTTGTTTGAGGACTTCCTTTGgtatgtaata ... tctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcttatctctagttaatttttactctaattagcagtacgagtctatgacagGGCAAACTCAATCTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTCTTATGTTTTTCTGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAAT
                          ctctaat  putative branch site (score: 3)
             tagttaatttttactc  TA-rich tract