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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catatgtttttactcgtgcttcctggcatcactattggtctaaatggttttcttcatccatatgttattatgccaaaatacttgctctcctttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT

Basic information

species Zea mays
transcript GRMZM2G078458_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 7
catatgtttttactcgtgcttcctggcatcactattggtctaaatggttttcttcatccatatgttattatgccaaaat---acttgct--ctcctttttggcagGAAATTGA------TATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT
       || || | ||   |  |  |||| | ||     | |||   ||| |||| |||||| || || | ||||| |   || ||||  ||  || ||  |||| || ||        |||||||||||| ||   ||||   |||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||      
tgccaaattgtatttgt---ttttaacatctcaat--acttcaattaatttgttcacccatatcttcttgttccaaattttaacatgctaactgtttgtttccagGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAA------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttcttcatccatatgttattatgccaaaatacttgctctcctttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT
                                 tacttgctctcctttt  CT-rich tract
              atatgttattat  TA-rich tract