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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgatatttcaattgtatgtgcctctctcatacgctctatcaaactcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT

Basic information

species Zea mays
transcript GRMZM2G077222_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g64400.4 (Oryza sativa), 3'ss of exon 6
---------------------------------------gtgatgatatttcaattgtatgtgcctctct--catacgctctatcaa---actcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT
                                          |        |||    |    |||||||  || | |  | | |||   | ||||||| | ||||| |  || ||||||| |||||||||||||||| ||||||||||| |||||  ||||||| || ||| | |||||||| |||| || |
gtgattctctaacccccaacgcaccccacaccaaacacccacacacccacacaacgacacacacctctctaccacaagtgcaaccaaaacagtcctaataatttgtccttactgcagTCCTGTGTCACGTCAAGACCTCGTGAGTTGGAAGATGGCTTTGGATAAAAGGCAATTACCTGAAGTGGACAAAACT

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 10
--------------------------gtgatgatatttcaattgtatgtgcc-tctctcatacgctctatcaaactcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT
                          | ||||   ||| || | | | ||   |     | |      | |   || ||   |  |  || |  || ||||||||| ||||||||||| ||||| || ||||||||||||||||| || ||||| || || |||| | ||||||| 
gtgcacagttgcactaccttctgtttgagatgtgcttttaactttgtatggtgtaggctacaattgtgacctcccttctctcctatattcatttctgcagTCCTTTATCACGTCAAGATCTTGTCAGCTGGAAAATGGCCCTGGAGAAAAGACAGCTTCCGGAAGCTAACAGAAAG

upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G30160.1 (Glycine max), 3'ss of exon 6
--------------------------gtgatgatatttcaattgtatgtgcc-tctctcatacgctctatcaaactcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT
                          | ||||   ||| || | | | || | |     | |      | |   || ||   |  |  |  |  || ||||||||| ||||||||||| ||||| || ||||||||||||||| | || ||||| || || |||| |||||| || 
gtgcacagttgcactaccctctgtttgagatgtgcttttaactttgtatggcgtgggctacaattgtgacctcccttctctcctatattaatttctgcagTCCTTTATCACGTCAAGATCTTGTCAGCTGGAAAATGGCCCTGCAGAAAAGACAGCTTCCGGAAGCTGACAGCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211155347|gb|FL193257.1|FL193257
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     AATATCCCAGAAGANGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGNAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGNCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|24764139|gb|CA399306.1|CA399306
EST:     TGAC-ATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: TGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211155344|gb|FL193254.1|FL193254
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTC
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTC
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGNCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         NCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGNCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     AATATCCCAGAAGATGNTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAANAN
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211534207|gb|FL317060.1|FL317060
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAANAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     AATATCCCAGAAGATGTTCATGA-AATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAG
EST: gi|211153750|gb|FL193251.1|FL193251
EST:     AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG                         TCCTTTGTCACG
genomic: AATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 141

CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 397

CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 162

CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 157

CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatat ... ttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgcctctctcatacgctctatcaaactcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT
                              tcctaat  putative branch site (score: 157)
                                        ttgtcttcccttc  putative PPT
                      tatcaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatgatatttcaattgtatgtgcctctctcatacgctctatcaaactcctaatcagttgtcttcccttcagTCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG