1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtcttgaataacacaccccctctcgttccctccacagacactacaaagaaatggaaacgttatgttcatatggttcttctattctatgaaatgtatgtacatagtacatacgattctcaaaagttgaaggtatttttttttacaacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGATGAAAATG
species | Zea mays |
transcript | GRMZM2G077187_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGEST: gi|78124930|gb|DV543314.1|DV543314
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGEST: gi|14243380|gb|BG841070.2|BG841070
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTEST: gi|211106207|gb|FL466526.1|FL466526
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTT
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACATGCAGTTTTTTCCACTACCATCTGEST: gi|86467942|gb|DY234312.1|DY234312
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGEST: gi|113701660|gb|EE679164.1|EE679164
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGEST: gi|76282157|gb|DV021725.1|DV021725
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
EST: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTG GGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCCCTACCATTTG
genomic: TGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttg ... caacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTG
tacatagtacatacgattctcaaaagttgaaggtatttttttttacaacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGATGAAAATG
tttttttttac CT-rich tract
tatttttttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcttgaataacacaccccctctcgttccctccacagacactacaaagaaatggaaacgttatgttcatatggttcttctattctatgaaatgtatgtacatagtacatacgattctcaaaagttgaaggtatttttttttacaacgtgcagGGTTCACGGTTGCTTCCATTTGCTACCTGCAGTTTTTTCCACTACCATCTGATGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG