Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC

Basic information

species Zea mays
transcript GRMZM2G076826_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g53240.2 (Oryza sativa), 3'ss of exon 6
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcct--cacttgatcttacttgcatt-ctcacttgattttactt----gcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC
                        | |  |   ||| ||  ||||| |||   | |   |  ||      |||   || ||       |||| |     ||||    |  | |    || |||||   |||  | || | | ||     |||   || |  ||  ||||||||||||||||  |||| || || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||  |  
-------------------gtctgaaaatcccttgaatc--attttcctttgaaaacacaaggactttggtcgaatagtatactactgcatggtttatgatcccagtatctcaaagaacctgcatggttcatgttatctcatttcatcactttgttggatttg--cagCTGCTCTGATGTCCGCAATTTACGAGGAGAACAAGGATGAGGATGGGTTCCTCTACATGACCTACAGTGGCGAGAACACCTTTGGGCTGCTCTAGGCGCG

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv19s0090g00580.t01 (Vitis vinifera), 3'ss of exon 5
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgctt---ccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC
                                                      | ||||   ||  | |   || |  |||     |||     |       |   ||     ||  |   || | | ||   || | ||  ||      ||        |||||||  |||||||| | |||||||| || ||||| ||||||||||| ||||| || ||||| |||||||| || ||||| || ||     ||||   |  
-----------------------------------------------------gtgagaaagaattcctt---tttaatattcaaatacacatatcgatgatgtagttt--ctgtaactat-ttattatttatattcatttatttgtattttgtgttatcacagCTGCCATGATGTCTGCCATCTATGAGGAAAACAAAGATGAGGATGGTTTCCTGTATATGACTTACAGTGGGGAAAACACATTTGGATCATTCTAACGGAA

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: EDO98830 (Chlamydomonas reinhardtii), 3'ss of exon 4
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttg-agcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC-
                                                     |  ||       | |   || ||  |||      | | || | | || ||      |   || ||   | | ||  |  |    | |||||  |||  |  |    |||| || || ||||| || |||||||| ||  ||||||||||||| || || || ||||| |||||||| || |||||||| |||||   ||        || 
----------------------------------------------------cagcagggccagagccgggcgctgtggcacc----gccgtg-tgcaccgtcgctgtctttgctcacc-acgtccttgc--gcccctccttgcaaccc--actcctcacagCCGCGCTCATGTCATCCATCTATGAGGACCACAAGGATGAGGACGGCTTTCTGTACATCACCTACAGCGGCGAGAACACGTTCGG-TGCCGGGGAGCAGCT

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: PP1S26_103V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------gtctg-gaaaataaatacagagacaacatacttctgactctgattttgc----------ttcctataagaa--ttgatggcattcgttgagcatt-tggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctg--tgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC
                |  | | || | |||  ||          ||| ||  |  |||||||           ||   ||   ||  |||  | | |  |    ||| |  |  ||  || |      |   ||||    |  |  ||     | | |  | |  |     |     | |  ||  |||||| ||| ||||||| || |||||||| ||| ||||||| || || || ||||| ||  | |||||||| ||||||||||| ||||||||      |||   
gtacgttagttgaatatgcgtgcaagtgaatggagtagtggtg-gcttgtgtgttagattttggatggaagtaattgtgattgaaaccttgtggtcgtatgcatggcactgcgtagatgtggttgtgtctgtgcactg---cagatctgagaagttagtgtagtgaatggattggatgggatgtgaatgcagCGGCTATGATGTCATCTATCTATGACGAGCACAAGGACGAAGACGGGTTCCTTTATTTTACCTACAGCGGTGAGAACACGTTCGGGCTATCGAGGATCTG

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: PP1S249_49V6.1 (Physcomitrella patens), 3'ss of exon 4
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGG-GCTCCTCTAGATGGC
                                       ||||| |  |   | ||  | |  |  ||  | ||   | |||||  ||   | | |   ||  ||| |  || |  |         || |  | |||  |||              |||||||||| ||||||| || || || || ||  ||||||||||||| |||||||| ||| | || ||||||||||| ||||||||||| | |  | |  |  | 
--------------------------------------ttgattctagtctgtgtattattgcactgctgttgtgtgggatttgttgatgggttacttaat--tcattgaatgtcgcac-------cattcaactttgtttg--------------tgcagCTGCTATGATGTCATCCATTTACGATGAACACAAGGATGAGGACGGATTCCTGTACTTTACTTACAGTGGTGAAAACACCTTCGGAGATGTTATCAACTG-

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: EFJ09352 (Selaginella moellendorffii), 3'ss of exon 4
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC--
                                                                                         ||||    || ||   || | |||  || |  ||       ||||||    || | |  |   | | || ||| ||  |||| ||  | ||||| || ||| ||||||| |||||||||||||||||| | || ||||| || ||||| ||||||||   |    |||   |  
---------------------------------------------------------------------------------------gtatgag---ccgtcgagacgtaatcccacgtatat-------tgatttacactgttcctttc--cttttgtagCGGCATTGATATCGACCATCTACGAGGAGCACAAGGACGAGGATGGATTCCTCTACTTCACGTACAGCGGGGAGAATACCTTCGG--CCAAGAAGAACACTA

upper sequence: GRMZM2G076826_T01 (Zea mays), 3'ss of exon 6
lower sequence: EFJ35003 (Selaginella moellendorffii), 3'ss of exon 4
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC--
                                                                                         ||||    || ||   || | |||  || |  ||       ||||||    |  | |  |   | | || ||| ||  |||| ||  | ||||| || ||| ||||||| |||||||||||||||||| | || ||||| || ||||| ||||||||   |    |||   |  
---------------------------------------------------------------------------------------gtatgag---ccgtcgagacgtaatcccacgtatat-------tgatttacactattcctttc--cttttgtagCGGCATTGATATCGACCATCTACGAGGAGCACAAGGACGAGGATGGATTCCTCTACTTCACGTACAGCGGGGAGAATACCTTCGG--CCAAGAAGAACACTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211035126|gb|FL190210.1|FL190210
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211509914|gb|FL437411.1|FL437411
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|17931727|gb|BM268687.1|BM268687
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|32867201|gb|CF006883.1|CF006883
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211192318|gb|FL065115.1|FL065115
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211194714|gb|FL065125.1|FL065125
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGA-CAAGGACGAGGATGGGTTCM
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|18165025|gb|BM334870.1|BM334870
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|71441162|gb|DR822212.1|DR822212
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG                         CTGCTTTGATGTTTTCAATTTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211194719|gb|FL065130.1|FL065130
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAAC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAAC
EST: gi|32918882|gb|CF023694.1|CF023694
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211192306|gb|FL065103.1|FL065103
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGSTCTGATGTCTTCAATCTATGAAGARAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211192307|gb|FL065104.1|FL065104
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAA
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAA
EST: gi|211194717|gb|FL065128.1|FL065128
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTNCTTCA-TCTATGAAGAGAACA-GGATGAGGATGGATTC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGT-CTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTC
EST: gi|78108303|gb|DV526721.1|DV526721
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|91052588|gb|EB163006.1|EB163006
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|84908620|gb|DW404498.1|DW404498
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAAGAACAAGGGACGAGGATGG
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGA-GAACAAGG-ATGAGGATGG
EST: gi|211168429|gb|FL208191.1|FL208191
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|16920503|gb|BM074688.1|BM074688
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|18174937|gb|BM350325.1|BM350325
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|71434664|gb|DR815714.1|DR815714
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|91051619|gb|EB162037.1|EB162037
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTNCA-TCTATG
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTT-CAATCTATG
EST: gi|32914815|gb|CF019627.1|CF019627
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGA
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGA
EST: gi|211168428|gb|FL208190.1|FL208190
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211192309|gb|FL065106.1|FL065106
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|93016974|gb|EB642494.1|EB642494
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|18169711|gb|BM339551.1|BM339551
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211192317|gb|FL065114.1|FL065114
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|16918829|gb|BM073915.1|BM073915
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|32909263|gb|CF014075.1|CF014075
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|60337001|gb|DN203974.1|DN203974
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|16926343|gb|BM079411.1|BM079411
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|74035341|gb|DT535830.1|DT535830
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAA
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAA
EST: gi|91875567|gb|EB405524.1|EB405524
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211194706|gb|FL065117.1|FL065117
EST:     GCTGAGAAAGCTATCTTCATCTTTCGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATC
genomic: GCTGAGAAAGCTATCTTCATCTTT-GTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATC
EST: gi|211192311|gb|FL065108.1|FL065108
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGAATGTCTTCAAT
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGA-TGTCTTCAAT
EST: gi|211194707|gb|FL065118.1|FL065118
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|91052589|gb|EB163007.1|EB163007
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|86856043|gb|DY307054.1|DY307054
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGGACGAGGATGG
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGG-ATGAGGATGG
EST: gi|211168430|gb|FL208192.1|FL208192
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|6194643|gb|AW146747.1|AW146747
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211194715|gb|FL065126.1|FL065126
EST:     GCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTNCCACNA-CAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: GCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTT-CCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|211194712|gb|FL065123.1|FL065123
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGGTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|78108000|gb|DV526418.1|DV526418
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|101394743|gb|EB819304.1|EB819304
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|93016973|gb|EB642493.1|EB642493
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|32862788|gb|CF002470.1|CF002470
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|71441163|gb|DR822213.1|DR822213
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|32936588|gb|CF041407.1|CF041407
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGAT
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGAT
EST: gi|211194708|gb|FL065119.1|FL065119
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACA-GGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|17930090|gb|BM267050.1|BM267050
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: gi|78108001|gb|DV526419.1|DV526419
EST:     TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG                         CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC
                       ttgatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCTCTACATGACCTACAGTGGTGAGAACACCTTCGGGCTCCTCTAGATGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC