1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctaggctgacagtcttttcaatgtctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATTGTTGAAGTATTGGATGATAGAACAAGGGATTCAAGATTACTTGCCTTGC
species | Zea mays |
transcript | GRMZM2G076484_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAG GTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATTEST: gi|32849273|gb|CD988954.1|CD988954
genomic: TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgt ... ctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
EST: TTTCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAG GTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
genomic: TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgt ... ctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
tttttgctttcaaacaagtacctaggctgacagtcttttcaatgtctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATTGTTGAAGTATTGGATGATAGAACAAGGGATTCAAGATTACTTGCCTTGC
gtctcac putative branch site (score: 89)
tctcact CT-rich tract
ttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctaggctgacagtcttttcaatgtctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATTGTTGAAGTATTGGATGATAGAACAAGGGATTCAAGATTACTTGCCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG