Sequence
atgc intronic sequence ATGC exonic sequencegttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g49810.1 (Oryza sativa), 3'ss of exon 7
gttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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gtaagtgcaatctagagttc-aatttggaattgcaatttcttggcaatgactgagaaacatgtattcggta---aaaactgctcatttttctaccatg------cagGAGCCTGAGAAACATGTATTCCATCTTGTTACTGACAAGCTGAACTTTGGAGCAATGAACATGTGGTTTTTGTTGAATCCACCTGGAGATGCGACAATCC
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G40260.1 (Glycine max), 3'ss of exon 8
--------------------------------------------------------------------------gttagtgtaatccc-catcttgaaactggaa---gtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttt----tgattttctt---------tctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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gtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA07G08910.1 (Glycine max), 3'ss of exon 5
gttagtgtaatccccatcttgaaactggaagtgtaatctc--ttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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----gcaccaaaaatatcgtgcatgtgaaagtgtatctatgatttagtaaattatacttttaaaaccaggcctcataac---tttg--ttattgtcttcaacgttgcagGATCCTTCAAAGCATGTTTTTCACCTTGTTACCGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTCTTTTAAACCCTCCTGAAAAAGCTACAATCC
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------------------------------------gttagtgtaatccc--catcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA03G02250.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------------------------------------------gttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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gtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaa-accaggcctcataacttagtttctgtcttcaatgttgcagGATCCATCGAAGAATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAGCATGTGGTTTCTTTTAAACCCTCCTGGAAAAGCTACAATCC
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 8
gttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctt--tctataaat--------tttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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----------------tttggataagcgaaaggggatttgttaggaaagcacaaaagggcatcacatatgttcttcc-tttttcattcactaagtttgctaataccctcgattgcagGAACCAGAAAAACATGTATTCCATCTGGTTACTGATAAGCTGAATTTTGGAGCCATGAATATGTGGTTTCTGTTGAACCCCCCAGGAAAAGCAACTATCC
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: PP1S251_8V6.1 (Physcomitrella patens), 3'ss of exon 8
gttagtgtaatccccatcttgaaactggaagtgtaatctcttcattatgtctaccatt---gaatga-----cccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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-------------gctcttacatagcataggtctattttctttttagttttagcggtttgagaataagcttctctgttattttgcaaggcctaagtgttatctgctg--ttgcagGATCCCAGTAAGCATGTCTTTCATGTTGTTACAGACAAACTGAACTATGGGGCCATGCGCATGTGGTTCTTGCTCAACCCCCCCGGTGCTGCTACCATCC
upper sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
lower sequence: PP1S128_25V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------------------------------------------------gttagtgtaatccccatcttgaa-actggaagtgtaatctcttcattatg-tctaccattgaatg-acccattatatagcacttttgattttctttctataaatttt-cagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
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gtatggagtctatcaagatctattcttttctgatagaggcctatggcctcagatattctatgttttgttttaaagcgacgctcgttaagtatgctgctgaaatgacttggtatatatgatcgagttttccatggatctgtcatagcaaacacct-atttcaactttatctttcttgcagGAGCCAGAGAAACACGTTTTTCACATTGTTACCGACAAGCTAAATTTTGGTGCCATGATGATGTGGTTTTTAGCAAATCCTCCCGGGGCTGCTGTCATACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71429642|gb|DR810692.1|DR810692EST: ATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCGAAG GAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGG
genomic: ATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCGAAGgttagtgtaa ... aaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC
ttttgat putative branch site (score: 4)
ttttc putative PPT
acttttgattttcttt TA-rich tract