1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgtccagtactccagttcaaaattcagtactggtcgatactctccatcctacttgtattctccttgcagtatattgttctgaatgcaaattttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCTCCATACCAGAAGCCACTGAAGCCTTATGTTCACCCCCTGCTAATTCCAA
species | Zea mays |
transcript | GRMZM2G075260_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGAT GAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCTEST: gi|28909594|gb|CB331004.1|CB331004
genomic: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGATgtaagtatga ... ttttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCT
EST: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGAT GAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCTEST: gi|28931006|gb|CB334367.1|CB334367
genomic: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGATgtaagtatga ... ttttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCT
EST: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGAT GAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCT
genomic: TGCTTGCACTGCTCCAACGCCGAGTTTTAGGGATGTATTCAAATGGAGATgtaagtatga ... ttttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCT
catcctacttgtattctccttgcagtatattgttctgaatgcaaattttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCTCCATACCAGAAGCCACTGAAGCCTTATGTTCACCCCCTGCTAATTCCAA
aatgcaaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtccagtactccagttcaaaattcagtactggtcgatactctccatcctacttgtattctccttgcagtatattgttctgaatgcaaattttatgcagGAACAGGACCACGAGAGCCCAGTAAAAGCAAAATTAACCAGCATTCCACCTCCATACCAGAAGCCACTGAAGCCTTATGTTCACCCCCTGCTAATTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC