1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttggtatactgaaatccatttctcattaaagctgtgtatttgcactaacaagagtattcgatacttcaatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTATTTACCACCATGTAGTTGGTGGTGTTCTAAACCCG
species | Zea mays |
transcript | GRMZM2G075153_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|211303407|gb|FL181618.1|FL181618
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|71419167|gb|DR804675.1|DR804675
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|61119178|gb|DN560139.1|DN560139
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|5343071|gb|AI795481.1|AI795481
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|148948278|gb|EC893795.2|EC893795
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTCCCAA-GTTCGTEST: gi|60398293|gb|DN231109.1|DN231109
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|149074757|gb|EE163186.2|EE163186
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|22133730|gb|BQ833872.1|BQ833872
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|78122335|gb|DV540719.1|DV540719
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|4647443|gb|AI622518.1|AI622518
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|76291941|gb|DV031509.1|DV031509
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|60355129|gb|DN222102.1|DN222102
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|74245809|gb|DT653723.1|DT653723
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|60397682|gb|DN230498.1|DN230498
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: ACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|47962545|gb|CN845254.1|CN845254
genomic: ACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|32914041|gb|CF018853.1|CF018853
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: CTGACCTAGTTATTCATTCTGCATCGAAGTACATTGCTCGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTEST: gi|32849779|gb|CD989460.1|CD989460
genomic: CTGACCTAGTTATTCATTCTGCAACGAAGTACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
EST: TACATTGCTGGACACAATGAT GTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
genomic: TACATTGCTGGACACAATGATgtgagttggt ... aatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGT
tcattaaagctgtgtatttgcactaacaagagtattcgatacttcaatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTATTTACCACCATGTAGTTGGTGGTGTTCTAAACCCG
cactaac putative branch site (score: 153)
tttccc putative PPT
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggtatactgaaatccatttctcattaaagctgtgtatttgcactaacaagagtattcgatacttcaatttcccagGTTATTGGAGGATGCGTCAGTGGCAGAGATGAGTTAGTTTCCAAAGTTCGTATTTACCACCATGTAGTTGGTGGTGTTCTAAACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG