1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaattcattcatttatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
species | Zea mays |
transcript | GRMZM2G074790_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|18649481|gb|BM498300.1|BM498300
genomic: AA-TCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATEST: gi|18450399|gb|BM428677.1|BM428677
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCAT
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGEST: gi|87152753|gb|DY397542.1|DY397542
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|31358270|gb|CD442627.1|CD442627
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: GAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAGATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCEST: gi|19822484|gb|BQ048508.1|BQ048508
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGC
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCNAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|6021191|gb|AW066119.1|AW066119
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|22489691|gb|BU049614.1|BU049614
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|87153562|gb|DY398351.1|DY398351
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
tatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
atctgat putative branch site (score: 157)
tatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattcattcatttatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA