1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaggctcttacatttagctgtagatttgtttctatgttaacattgtctccttagtaactccaaagcatgttttgttcaatatcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATGATGGTACTGTGAAGATGTGGGATGTCCGGACTGATACTTGTGTTGTTA
species | Zea mays |
transcript | GRMZM2G074466_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|32841191|gb|CD980872.1|CD980872
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|32840987|gb|CD980668.1|CD980668
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|32841098|gb|CD980779.1|CD980779
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|32840943|gb|CD980624.1|CD980624
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|32840932|gb|CD980613.1|CD980613
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCCATCCCAEST: gi|32841011|gb|CD980692.1|CD980692
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGC-ATCCCA
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|71437502|gb|DR818552.1|DR818552
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAEST: gi|71437503|gb|DR818553.1|DR818553
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCA
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATEST: gi|211489770|gb|FL012891.1|FL012891
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
EST: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCG GTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
genomic: ATAAGCAGACTTTTAAGCTTTTGGAAGAACTGAAGGGCCACGAGGCACCGgtgaggctct ... atcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCAT
gttaacattgtctccttagtaactccaaagcatgttttgttcaatatcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATGATGGTACTGTGAAGATGTGGGATGTCCGGACTGATACTTGTGTTGTTA
tagtaac putative branch site (score: 69)
ttcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctcttacatttagctgtagatttgtttctatgttaacattgtctccttagtaactccaaagcatgttttgttcaatatcggtatagGTTAGTTCTGTCCGGATGCTCTCAGGAGAACGTGTCCTTATTGCATCCCATGATGGTACTGTGAAGATGTGGGATGTCCGGACTGATACTTGTGTTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG