1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgatccacaaacatgcaaaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGTACATCGACCTGAGGAAGGACTAAGCCAACGCTTCAGTTGTGCTGCAGC
species | Zea mays |
transcript | GRMZM2G074386_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|84980373|gb|DW530722.1|DW530722
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|45847129|gb|CN071072.1|CN071072
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|71428371|gb|DR809421.1|DR809421
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|31362426|gb|CD446783.1|CD446783
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|32938641|gb|CF043460.1|CF043460
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|149088717|gb|EE177839.2|EE177839
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|78106986|gb|DV525404.1|DV525404
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|17930931|gb|BM267891.1|BM267891
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|32938447|gb|CF043266.1|CF043266
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|7135769|gb|AW498256.1|AW498256
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGNCAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|67031178|gb|CO459927.1|CO459927
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|74239718|gb|DT647632.1|DT647632
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|12968327|gb|BG265273.1|BG265273
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|113689738|gb|DW847475.1|DW847475
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCEST: gi|24769350|gb|CA404479.1|CA404479
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATC
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|149111500|gb|EE295003.2|EE295003
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|32847010|gb|CD986691.1|CD986691
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|16926492|gb|BM079560.1|BM079560
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|60352481|gb|DN219454.1|DN219454
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|61118932|gb|DN559893.1|DN559893
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCCACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|14717546|gb|BI245196.1|BI245196
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|14243859|gb|BG841581.2|BG841581
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|17932205|gb|BM269165.1|BM269165
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|76013087|gb|DT940257.1|DT940257
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|40302852|gb|CK347239.1|CK347239
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACTCT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|74240043|gb|DT647957.1|DT647957
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|60340468|gb|DN207441.1|DN207441
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|78109496|gb|DV527912.1|DV527912
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGEST: gi|14243256|gb|BG840908.2|BG840908
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
gtttctcttttatatatatctaccctgttgatccacaaacatgcaaaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGTACATCGACCTGAGGAAGGACTAAGCCAACGCTTCAGTTGTGCTGCAGC
tgttgat putative branch site (score: 4)
tcttttatatatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgatccacaaacatgcaaaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAGTACATCGACCTGAGGAAGGACTAAGCCAACGCTTCAGTTGTGCTGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG