1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acacccgtggcccgtgcataatttcttttaattgaagtgcataatccgtgtatatgtcattgctataaaatgttgtctttggttttatcttgttgcctagCCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTTAGTGAGGGCACAAGTGCAGATCGTGAGATTCAGAGGACATTGATGGAGC
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGTS-ACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAG CCATGCATCATTTTCATGGATGARATTGATGCCATTGGTGGCCGAAGATTTEST: gi|211075772|gb|FL462562.1|FL462562
genomic: AAAGTGCACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAGgtaagctttg ... tgttgcctagCCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTT
EST: AAAGTGCACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAG CCATGCATCATTTTCEST: gi|211416916|gb|FL328808.1|FL328808
genomic: AAAGTGCACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAGgtaagctttg ... tgttgcctagCCATGCATCATTTTC
EST: AAAGTGCACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAG CCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTT
genomic: AAAGTGCACGCTTAATTCGTGAAATGTTTAACTATGCACGTGAGCATCAGgtaagctttg ... tgttgcctagCCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTT
ccgtgtatatgtcattgctataaaatgttgtctttggttttatcttgttgcctagCCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTTAGTGAGGGCACAAGTGCAGATCGTGAGATTCAGAGGACATTGATGGAGC
ttttatctt CT-rich tract
tataaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacccgtggcccgtgcataatttcttttaattgaagtgcataatccgtgtatatgtcattgctataaaatgttgtctttggttttatcttgttgcctagCCATGCATCATTTTCATGGATGAAATTGATGCCATTGGTGGCCGAAGATTTAGTGAGGGCACAAGTGCAGATCGTGAGATTCAGAGGACATTGATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - -gtgcata