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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagaaggaacaatgttctctgcttctagctttgaatttcctcatcatgttttagaacaactgacctaacattattcgaacccatttttcttcgattcagGTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAG

Basic information

species Zea mays
transcript GRMZM2G070553_T01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148938118|gb|EC882387.2|EC882387
EST:     CATTGAACGGGCGTTCTCTGAAGCTGAGGCCATGCAGAGGTCATTGCCTG                         CTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCT
genomic: CATTGAACGGGCGTTCTCTGAAGCTGAGGCCATGCAGAGGTCATTGCCTGgtacagttct ... ttcgattcagGTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttttagaacaactgacctaacattattcgaacccatttttcttcgattcagGTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAG
                  acctaac  putative branch site (score: 2)
                                   cccatttttcttc  putative PPT
                     taacattatt  TA-rich tract