1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagattcctttattctcagtactgcactttactagggtaatacctgttttttatatcttaacttctgaaacttgtatttttcttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATC
species | Zea mays |
transcript | GRMZM2G069765_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|60358233|gb|DN225206.1|DN225206
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|211229383|gb|FL136771.1|FL136771
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAA-TTGNCAEST: gi|211227330|gb|FL136768.1|FL136768
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTG-CA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|22472423|gb|BU036903.1|BU036903
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: GTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|211231450|gb|FL136786.1|FL136786
genomic: GTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAAT-GCA-EST: gi|76014861|gb|DT942031.1|DT942031
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|211229381|gb|FL136769.1|FL136769
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAAT-GCAAEST: gi|22491088|gb|BU051011.1|BU051011
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|19350690|gb|BM895222.1|BM895222
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|211229385|gb|FL136773.1|FL136773
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|19351773|gb|BM896305.1|BM896305
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGGTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGGACTTGACAAAATTGCEST: gi|211229388|gb|FL136776.1|FL136776
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGC
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAEST: gi|211229394|gb|FL136782.1|FL136782
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAAATGCAAEST: gi|87153647|gb|DY398436.1|DY398436
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|31354825|gb|CD439182.1|CD439182
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|211229386|gb|FL136774.1|FL136774
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCCACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGAACAAA-TTGCAEST: gi|31354522|gb|CD438879.1|CD438879
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGA-CAAAATTGCA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|148949761|gb|EC895244.2|EC895244
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|31354218|gb|CD438575.1|CD438575
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|22491149|gb|BU051072.1|BU051072
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|22542007|gb|BU092445.1|BU092445
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: CATTCATCGACAAGAACTACCATCCTACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAAEST: gi|149084479|gb|EE173941.2|EE173941
genomic: CATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAA
EST: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAG CATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTTGACAAA-TTGCA
genomic: TGCACAGGCATTCATCGACAAGAACTACCATCCAACTGTTATTTGCCGAGgtaagattcc ... ttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTT-GACAAAATTGCA
taatacctgttttttatatcttaacttctgaaacttgtatttttcttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATC
tcttaac putative branch site (score: 2)
tatttttcttatcttc putative PPT
ttttttatatcttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcctttattctcagtactgcactttactagggtaatacctgttttttatatcttaacttctgaaacttgtatttttcttatcttcagCATATACCAAAGCGCTTGATGATGCTATTGCTGTACTTGACAAAATTGCAATGGCTGTTGATGTGAATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT