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...tagctttatgttgaattctccagtaatttcttatcaactaagatggcggtttactctttgtagtaattggaactgcttttgctctaaacatgctgttcagAATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCTCTTATTGCTGCAGCAATATGGG
species | Zea mays |
transcript | GRMZM2G069198_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAG A-TCCCAGTATTGGGTGTGGTGTTCTAATAEST: gi|88757771|gb|DY541912.1|DY541912
genomic: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaa ... tgctgttcagAATCCCAGTAT-GG-TGTGGTGTTCTAATA
EST: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAG AATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCT
genomic: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaa ... tgctgttcagAATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCT
gcggtttactctttgtagtaattggaactgcttttgctctaaacatgctgttcagAATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCTCTTATTGCTGCAGCAATATGGG
ctctaaa putative branch site (score: 3)
tagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctttatgttgaattctccagtaatttcttatcaactaagatggcggtttactctttgtagtaattggaactgcttttgctctaaacatgctgttcagAATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCTCTTATTGCTGCAGCAATATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG