1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttgccctttttttagttcctttttgcacttttttagttcttgtttgtgccttttcagttttcaatacatcttcatctgaagcttctcttgatgtgcagGGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGGCCGACATGCAAGTTTGATCACCCGATGGGTACTCCAAACTATAGTATTT
species | Zea mays |
transcript | GRMZM2G069009_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCT GGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGG
genomic: AAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCTgtgagtagat ... tgatgtgcagGGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGG
ttgtgccttttcagttttcaatacatcttcatctgaagcttctcttgatgtgcagGGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGGCCGACATGCAAGTTTGATCACCCGATGGGTACTCCAAACTATAGTATTT
tcttgat putative branch site (score: 30)
cttctctt CT-rich tract
ttttcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgccctttttttagttcctttttgcacttttttagttcttgtttgtgccttttcagttttcaatacatcttcatctgaagcttctcttgatgtgcagGGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGGCCGACATGCAAGTTTGATCACCCGATGGGTACTCCAAACTATAGTATTT
tgttgcc
- - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaagc