1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgacactttgtgtaaagtatgttatggaatagctgtaccttttgttagtattactgaacaaatctgacattgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTGGTGCTGCATCGAATGGCTCTAGAATCAGATGTCTTTGGTGATGCCGCTG
species | Zea mays |
transcript | GRMZM2G068913_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAG GGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTGEST: gi|67032024|gb|CO460773.1|CO460773
genomic: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacacttt ... attgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTG
EST: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAG GGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTGEST: gi|31909437|gb|CD650918.1|CD650918
genomic: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacacttt ... attgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTG
EST: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAG GGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTG
genomic: CTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacacttt ... attgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTG
atggaatagctgtaccttttgttagtattactgaacaaatctgacattgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTGGTGCTGCATCGAATGGCTCTAGAATCAGATGTCTTTGGTGATGCCGCTG
ttttgttagtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacactttgtgtaaagtatgttatggaatagctgtaccttttgttagtattactgaacaaatctgacattgatccagGGGTTTGAAAAAATGATATCTGGGATTTATCTTGGGGAAATTGCAAGGCTGGTGCTGCATCGAATGGCTCTAGAATCAGATGTCTTTGGTGATGCCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG