1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcagtgcttttactgtagcatatttgaaaacctttctatacttcttttattttctccaaagtaatttctcataattcatttactaaaacgtttatgccttgatcttgtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG
species | Zea mays |
transcript | GRMZM2G068506_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAA AACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAAEST: gi|166581786|gb|EG229204.1|EG229204
genomic: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAAgtaagcagtg ... gtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAA AACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCEST: gi|32941027|gb|CF045846.1|CF045846
genomic: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAAgtaagcagtg ... gtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATC
EST: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAA AACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAAEST: gi|32836730|gb|CD976408.1|CD976408
genomic: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAAgtaagcagtg ... gtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAA
EST: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAA AACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAA
genomic: TTGATGCTGATGTGACAGACAGTGTTATTGGTGAAGGATGTGTTATTAAAgtaagcagtg ... gtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAA
taatttctcataattcatttactaaaacgtttatgccttgatcttgtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG
ataattcatttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagtgcttttactgtagcatatttgaaaacctttctatacttcttttattttctccaaagtaatttctcataattcatttactaaaacgtttatgccttgatcttgtgcacacagAACTGCAAGATAAACCATTCTGTAGTTGGACTCCGATCTTGCATATCTGAAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA