1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagagattgttttttttaccaagttcttagtgccctgcattgtacttctgatagccgaagctttcatgtttgctttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
species | Zea mays |
transcript | GRMZM2G068392_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTG-A---A ---TTCCCGGAAGCGGATTCATTCTTTTGCTTCGCCGAGTTGCTTAEST: gi|50331307|gb|CO526433.1|CO526433
genomic: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGAgtaagagatt ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTA
EST: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGA GAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGEST: gi|50331308|gb|CO526434.1|CO526434
genomic: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGAgtaagagatt ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
EST: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGA GAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGEST: gi|71433967|gb|DR815017.1|DR815017
genomic: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGAgtaagagatt ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
EST: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTG-A---A ---TTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
genomic: CCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATGGAgtaagagatt ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
tttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
cccttgt CT-rich tract
attactatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagattgttttttttaccaagttcttagtgccctgcattgtacttctgatagccgaagctttcatgtttgctttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT