1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggagtaagagattgttttttttaccaagttcttagtgccctgcattgtacttctgatagccgaagctttcatgtttgctttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
species | Zea mays |
transcript | GRMZM2G068392_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATCCGGATGATAAAAATGCT GAATTCGCGTAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGEST: gi|78076513|gb|DV504947.1|DV504947
genomic: TGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
EST: AGTGATCCGGATGATAAAAATGCT GAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGEST: gi|60342736|gb|DN209709.1|DN209709
genomic: AGTGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATEST: gi|60342736|gb|DN209709.1|DN209709
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGC----Tgtatggagta ... acccttg
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATEST: gi|60342736|gb|DN209709.1|DN209709
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGC----Tgtatggagta ... acccttg
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATEST: gi|60342736|gb|DN209709.1|DN209709
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGC----Tgtatggagta ... acccttg
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTGTATEST: gi|50324142|gb|CO519268.1|CO519268
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGC----Tgtatggagta ... acccttg
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCT GAATTCGCGGAAEST: gi|50331308|gb|CO526434.1|CO526434
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagGAATTCGCGGAA
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCT GTATGGAGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTEST: gi|71433967|gb|DR815017.1|DR815017
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagG-A---A---TTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCT
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCT GAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGEST: gi|38502614|gb|CF972474.1|CF972474
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGG
EST: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCT GAATTCCCGGAAGCGGATTCATTCTTTTGCTTCGCCGAGTTGCTTA
genomic: TGGCACCCCTCTTCTTTGTATTTCGGAGTGATCCGGATGATAAAAATGCTgtatggagta ... acccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTA
tttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
cccttgt CT-rich tract
attactatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggagtaagagattgttttttttaccaagttcttagtgccctgcattgtacttctgatagccgaagctttcatgtttgctttagtcattactatatcttctgtatcgtgatcttgctattcggaacccttgtagGAATTCGCGGAAGCGGATTCATTCTTTTGCTTCGTCGAGTTGCTTAGTGGGTTCAGAGACAACTTCTGCCAGAAACTGGACAACAGTGCTGTTGGCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT