1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatagttaaggcaatcgatcttgtagtggatatacttttttagtcatgttgcacttgttattcataagatggatttgatttgttaggtgcctttggttttcagcgaaggaccttcttgtaacatattaactgcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG
species | Zea mays |
transcript | GRMZM2G068277_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCEST: gi|60345943|gb|DN212916.1|DN212916
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCEST: gi|78122195|gb|DV540579.1|DV540579
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCEST: gi|211478808|gb|FL379717.1|FL379717
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCEST: gi|71443220|gb|DR824270.1|DR824270
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCEST: gi|211359065|gb|FL430712.1|FL430712
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAADTCTTATAATGAAGCEST: gi|50331676|gb|CO526802.1|CO526802
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
gtgcctttggttttcagcgaaggaccttcttgtaacatattaactgcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG
tattaac putative branch site (score: 114)
ctgctttt CT-rich tract
ttgtaacatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagttaaggcaatcgatcttgtagtggatatacttttttagtcatgttgcacttgttattcataagatggatttgatttgttaggtgcctttggttttcagcgaaggaccttcttgtaacatattaactgcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC