1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgtaccattttttttctttgggggggggggggggggggggaggacaatgtatgacagacccgaatggatcaatgaaatttgttttcttattttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGGGCGTTGGATTATTGTTTACAGCCATTGCTGCCGCTTATGTAACGAGGC
species | Zea mays |
transcript | GRMZM2G068271_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATT CAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGEST: gi|161592131|gb|EY962276.1|EY962276
genomic: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATCgtgagttctt ... attttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
EST: CGGTGCATTCGGGCGAGCTTTAATT CAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGEST: gi|71757264|gb|DR955201.1|DR955201
genomic: CGGTGCATTCGGGCGAGCTTTAATCgtgagttctt ... attttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
EST: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATC CAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGEST: gi|211409239|gb|FL441030.1|FL441030
genomic: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATCgtgagttctt ... attttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
EST: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATC CAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGEST: gi|58029461|gb|CX724888.1|CX724888
genomic: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATCgtgagttctt ... attttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
EST: CAGGTTCGTGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATC CAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
genomic: CAGGTTCATGGGCTTACGTCAGTGCCGGTGCATTCGGGCGAGCTTTAATCgtgagttctt ... attttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTG
acaatgtatgacagacccgaatggatcaatgaaatttgttttcttattttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGGGCGTTGGATTATTGTTTACAGCCATTGCTGCCGCTTATGTAACGAGGC
tttgttttcttatttt CT-rich tract
aatgaaatttgttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtaccattttttttctttgggggggggggggggggggggaggacaatgtatgacagacccgaatggatcaatgaaatttgttttcttattttgacagCAAGATGAGTCGGAAATTGGTTTGGGAGGAAACGAACAGCTATGGACACTGGGCGTTGGATTATTGTTTACAGCCATTGCTGCCGCTTATGTAACGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- tgtacca
- - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaaa