1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagttgaccttacaatgtctatatgatcgtggcatgctgtttacattcagaactttcttatttgagtcttaagagctgcataaagattgctgatgtaattcttgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGGTAAAACCAGACACTATTAGAAACATCATGGACATGAAGGCAAACTTTG
species | Zea mays |
transcript | GRMZM2G067764_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACG GAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGEST: gi|211213070|gb|FK975871.1|FK975871
genomic: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACGgttagttgac ... tgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
EST: CCCGTCTTGTTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACG GAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGEST: gi|78180182|gb|DV550555.1|DV550555
genomic: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACGgttagttgac ... tgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
EST: CCCGTCTTGTTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACG GAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGEST: gi|32855543|gb|CD995224.1|CD995224
genomic: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACGgttagttgac ... tgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
EST: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACG GAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGTTGGGCCCAAAGEST: gi|12046628|gb|BF728767.1|BF728767
genomic: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACGgttagttgac ... tgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
EST: CCCGTCTTGGTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACG GAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
genomic: CCCGTCTTGCTGATTTGTACATTACTGCTGACACATTTGAAAAGGACACGgttagttgac ... tgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAG
ttatttgagtcttaagagctgcataaagattgctgatgtaattcttgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGGTAAAACCAGACACTATTAGAAACATCATGGACATGAAGGCAAACTTTG
tgctgat putative branch site (score: 66)
ttcttgct putative PPT
ataaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttgaccttacaatgtctatatgatcgtggcatgctgtttacattcagaactttcttatttgagtcttaagagctgcataaagattgctgatgtaattcttgctgtgcagGAAATGTGGCAGCAAAGAGTAGAAAACTATTGGAGTTTGCTGGGCCCAAAGGTAAAACCAGACACTATTAGAAACATCATGGACATGAAGGCAAACTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA