1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcgtgtcgatatgatccgtcgtctttgctggctgtacatgctaactttccatcgcttcttggatgcaatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTCGTGCTGAACGCGTTCGTGGTGGCGTGGATGCTGGTGGTTGGATTCGGCC
species | Zea mays |
transcript | GRMZM2G067022_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTG AACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTCEST: gi|91870568|gb|EB400952.1|EB400952
genomic: TCCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTGgtaagcgtgt ... aatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTC
EST: CCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTG AAGGCAGCGGAGAAGCCGCCGTCCTTCTTCCCGAGCTGGTCGGGGATGTTCEST: gi|149086899|gb|EE176442.2|EE176442
genomic: CCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTGgtaagcgtgt ... aatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTC
EST: TCCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTG AACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTC
genomic: TCCCGGCCCTCGCCCACATGCTCACGTACCGCTCCGCGTCCGCCAGATTGgtaagcgtgt ... aatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTC
tctttgctggctgtacatgctaactttccatcgcttcttggatgcaatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTCGTGCTGAACGCGTTCGTGGTGGCGTGGATGCTGGTGGTTGGATTCGGCC
tgctaac putative branch site (score: 3)
taacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtgtcgatatgatccgtcgtctttgctggctgtacatgctaactttccatcgcttcttggatgcaatgcaacagAACGCAGCGGAGAAGCCGCCGTCCTTCTTGCCGAGCTGGTCGGGGATGTTCGTGCTGAACGCGTTCGTGGTGGCGTGGATGCTGGTGGTTGGATTCGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG