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...cctattctagtctacttgatatgttgtaattagcaccatgatttatttgtgtgcaattctacttttctaatcttaaccctctttcattttcattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAAAAAGGCAAGCTATCAAG
species | Zea mays |
transcript | GRMZM2G066051_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|18660671|gb|BM500986.1|BM500986
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|148999213|gb|EE036132.2|EE036132
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|149082295|gb|EE171480.2|EE171480
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|7844268|gb|AW787490.1|AW787490
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGAATGG GTCTTTGAAGAATTTAACTCTAGGGTGCTGTCATCAACCAACTACATAACAEST: gi|6194845|gb|AW146949.1|AW146949
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGNGGCTGAATTTCTATCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGEST: gi|111192096|gb|EE290232.1|EE290232
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTG
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTTTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|149041351|gb|EE046989.2|EE046989
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|78107218|gb|DV525636.1|DV525636
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|33467028|gb|CF244077.1|CF244077
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTTTAGGTTGCTGTCATCACCCAACTACATAACAEST: gi|60354560|gb|DN221533.1|DN221533
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|5895944|gb|AW037190.1|AW037190
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|6445388|gb|AW179351.1|AW179351
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|6056599|gb|AW091004.1|AW091004
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|3157331|gb|AA979953.1|AA979953
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: GCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|5525422|gb|AI861315.1|AI861315
genomic: GCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTTTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|24769447|gb|CA404576.1|CA404576
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCACCCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|60350125|gb|DN217098.1|DN217098
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|211020659|gb|FL429513.1|FL429513
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATTATTGG TTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAEST: gi|71328879|gb|DR801122.1|DR801122
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
EST: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGG TTCTTTGAAGAATTTAACTTTAGGTTGCTGTCATCAACCAACTACATAACA
genomic: CAAGGCATAAAGCAACCGTGGCTGAATTTCTCTCCAACAATTATGATTGGgtcagcattt ... cattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACA
tttgtgtgcaattctacttttctaatcttaaccctctttcattttcattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAAAAAGGCAAGCTATCAAG
tcttaac putative branch site (score: 104)
tcttaaccctctttca CT-rich tract
ttttctaatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctattctagtctacttgatatgttgtaattagcaccatgatttatttgtgtgcaattctacttttctaatcttaaccctctttcattttcattccttagTTCTTTGAAGAATTTAACTCTAGGTTGCTGTCATCAACCAACTACATAACAAAAAGGCAAGCTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - -ctacttg
- - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - catgatt