Sequence
atgc intronic sequence ATGC exonic sequence...gcattcattattgaccttttaccatctgtcatccgtccatcatatatcatgtgcttttatccttcaataccactgtaattccatgcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 3'ss of exon 6
gcattcattattgaccttttaccatctgtcatccgtcc--atcatatatcat--gtgcttttatccttca-ataccactgtaattccat-gcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
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----------acagggttctgttgcttgttgtgtgtttaaatgcaggatcatccctactgttacgttccacatgtttatatttttctttcacatgctattaccttttcag-
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 6
------gcattcattattgaccttttaccatc-tgtcatccgtccatcatatatcatgtgcttttatccttcaataccactgtaattccatgcttgtcttctg---ctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
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gtaatctcagtcttatatgtagctctactattgtgtatgtcgctttacctttgtga-gggctcttctgtttgcacatttgtttaagcagtgccttttccttttaatctagGCAACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTT
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 6
---------gcattcattattgaccttttaccatct--gtcatccgtccatcatata---tcatgtgcttttatccttcaatac-cactgtaattccatgcttgtct---tctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
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gtaatctcagtcttatctatagctctactactgtgtatgttgcttgacctttgtgagggcttttctgtttgcaaatttgtttaagcagtgtttttttttttttttataaataatccagGCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTT
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 6
gcattcattattgaccttttacca--tctgtcatccgtccatcatatatcatgtgctt-ttatccttcaataccac-tgtaattccatgcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
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gtacacactatctgctctgtgtttattcatttattcagttgacttaatttttgtgattacttttgctcaaaatctcgtctgattgagacattggttgcca-tagGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcatgtgcttttatccttcaataccactgtaattccatgcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
cttgtcttct CT-rich tract
ttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcattcattattgaccttttaccatctgtcatccgtccatcatatatcatgtgcttttatccttcaataccactgtaattccatgcttgtcttctgctagGCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG