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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaatttagagggtgtcctgaaagtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC

Basic information

species Zea mays
transcript GRMZM2G064302_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064302_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g04510.1 (Oryza sativa), 3'ss of exon 6
gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaatttagagggtgtcctgaaagtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC
|||| | |||    ||||| ||   | | | | | ||||  | || | | || |||   | | || |||  | |   | ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| || || || ||||| |||||||| || |||||||||||||| ||||||||||
gtctgttaaaca--actgc-atcggtatataactttgttcttctgaa-acttcagaacctatgctaaaacatcaagaaattgcagCACATTGCAAATCTTGCTGGAAACAAGACTCTCGTGCTGCCTGTACCCGCTTTCAATGTGATCAATGGAGGATCCCATGCTGGAAACAAACTTGCCATGC

upper sequence: GRMZM2G064302_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA16G32960.1 (Glycine max), 3'ss of exon 6
gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaatttagagggtgtcctgaaa--gtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC
|| | | |  | |  | |   | ||  || |  | |||   | |       | |     ||   |  ||  ||||  || ||| |||||||| || ||||| ||||||||||| ||| |||| || ||||| ||| | || || || || |||||||| |||||||| ||||| ||||| || ||||
gtatgtgaggtttttcagtagtaatagttcttatctgtgaatcttgtgttctcatgttctgcttttgaattgttttatt-ttttcagCACATTGCTAATCTGGCTGGAAACAAGACTTTGGTACTACCTGTGCCTTCATTCAATGTTATCAATGGAGGCTCACATGCAGGAAATAAGCTAGCAATGC

upper sequence: GRMZM2G064302_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA09G28100.1 (Glycine max), 3'ss of exon 6
gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaatttagagggtgtcctgaaagtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC
|| | | |  | ||| |  ||  |  | ||||| |        || |    | |  |   |   |   | | |  | ||||  ||||||| || ||||| ||||||||||| ||| |||| || ||||||||| | || || || || |||||||| |||||||||||||| ||||| || ||||
gtatgtgaggtttcagtaata-aaagtatttataagtgaaacttgtatt-ctcatggtccgcttttgtattgttttaatttttagCACATTGCCAATCTGGCTGGAAACAAGACTTTGGTACTGCCTGTACCTTCATTCAATGTTATCAATGGAGGCTCACATGCTGGAAATAAGCTAGCAATGC

upper sequence: GRMZM2G064302_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 6
--------gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaa------tttagagggtgtcctgaaagtttagttat---ttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC
          |  |   ||    |    ||  || |||||   |  |   ||||| ||       ||| | | |  |       | || || |    |||||||||| || |||||||||||||||||||   | ||||| ||||||||||| || || || || |||||||| || |||||||| ||||| || |||||||
gtacagtatgcagtagcataattcattcatagttattttaaactaattacatgcataaatttttcttacatgattactcttgtttatatttgtaccctgcagCACATTGCTAATCTTGCTGGAAACAAAAAGTTAGTGCTGCCTGTACCTGCATTCAATGTTATCAATGGAGGTTCTCATGCTGGCAACAAACTAGCCATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355773|gb|CD440130.1|CD440130
EST:     GCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: GCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31354199|gb|CD438556.1|CD438556
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|33101954|gb|CF061914.1|CF061914
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|148946585|gb|EC890118.2|EC890118
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67024719|gb|CO453468.1|CO453468
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67013116|gb|CO441865.1|CO441865
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32920889|gb|CF025701.1|CF025701
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGT
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGT
EST: gi|33101714|gb|CF061674.1|CF061674
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|161407677|gb|DW042395.1|DW042395
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGC
EST: gi|29130602|gb|CB381306.1|CB381306
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67012265|gb|CO441014.1|CO441014
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67024944|gb|CO453693.1|CO453693
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31358889|gb|CD443246.1|CD443246
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|148986420|gb|EE030161.2|EE030161
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|87152414|gb|DY397203.1|DY397203
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|211023765|gb|FL452149.1|FL452149
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31364425|gb|CD448780.1|CD448780
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67018586|gb|CO447335.1|CO447335
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67016127|gb|CO444876.1|CO444876
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|37385854|gb|CF630092.1|CF630092
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31362399|gb|CD446756.1|CD446756
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67019052|gb|CO447801.1|CO447801
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31353289|gb|CD437646.1|CD437646
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67016019|gb|CO444768.1|CO444768
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|22819039|gb|BU499129.1|BU499129
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32921440|gb|CF026252.1|CF026252
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGT
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGT
EST: gi|32910676|gb|CF015488.1|CF015488
EST:     GGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: GGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|21760297|gb|BQ635838.1|BQ635838
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67015460|gb|CO444209.1|CO444209
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31353228|gb|CD437585.1|CD437585
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67013023|gb|CO441772.1|CO441772
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|33101016|gb|CF060976.1|CF060976
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67026148|gb|CO454897.1|CO454897
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|148936670|gb|EC880797.2|EC880797
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|19822768|gb|BQ048792.1|BQ048792
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTGCCAG                         CACATCGCAAATCTTGCTGGGACCAAAGCTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|149010075|gb|EE041882.2|EE041882
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|33100819|gb|CF060779.1|CF060779
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67012612|gb|CO441361.1|CO441361
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31364479|gb|CD448834.1|CD448834
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67021068|gb|CO449817.1|CO449817
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|5555512|gb|AI881463.1|AI881463
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|149075538|gb|EE164069.2|EE164069
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|149073301|gb|EE161594.2|EE161594
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31361063|gb|CD445420.1|CD445420
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|24768145|gb|CA403274.1|CA403274
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31355823|gb|CD440180.1|CD440180
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32933310|gb|CF038122.1|CF038122
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGT
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGT
EST: gi|148959969|gb|EE153208.2|EE153208
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32920185|gb|CF024997.1|CF024997
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGT
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGT
EST: gi|21809501|gb|BQ667819.1|BQ667819
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|149095202|gb|EE180823.2|EE180823
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|6626414|gb|AW257946.1|AW257946
EST:     TTGCGGCGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67014200|gb|CO442949.1|CO442949
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|21331626|gb|BQ487007.1|BQ487007
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32920242|gb|CF025054.1|CF025054
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGT
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGT
EST: gi|67013081|gb|CO441830.1|CO441830
EST:     TTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGCAAACAAAACTCTGGTGCTCCCTGTACCTGC
genomic: TTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGG-AAACAAAACTCTGGTGCTCCCTGTACCTGC
EST: gi|149098506|gb|EE184486.2|EE184486
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|31351789|gb|CD436146.1|CD436146
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|60339638|gb|DN206611.1|DN206611
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|32919805|gb|CF024617.1|CF024617
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACCAAAACTCTGGTGCTCCCTGTACCTGC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCT-GGAAACAAAACTCTGGTGCTCCCTGTACCTGC
EST: gi|148941883|gb|EC886864.2|EC886864
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|22489824|gb|BU049747.1|BU049747
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGGAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|78079386|gb|DV507798.1|DV507798
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|78107645|gb|DV526063.1|DV526063
EST:     TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
EST: gi|67016450|gb|CO445199.1|CO445199
EST:     TTGCTGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAG                         CACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC
genomic: TTGCGGTGTGCAAAGCTGGAGCTATGGTGAAGAAGATTCCTCTTTACCAGgtctttcaaa ... ttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgttggtatgcacaatttagagggtgtcctgaaagtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC
                                    aaagtttagttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctttcaaatgtcactgctatgatttttttattatgttggtatgcacaatttagagggtgtcctgaaagtttagttatttgcagCACATCGCAAATCTTGCTGGAAACAAAACTCTGGTGCTCCCTGTACCTGCCTTTAACGTGATTAATGGAGGGTCACATGCTGGAAACAAGCTTGCCATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT