1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cccttttttatcactatgaatacacagttgatggcccaggtgcatgattgtttagctatatagtaatggtattaatactggaatgttctctatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG
species | Zea mays |
transcript | GRMZM2G064212_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|71320080|gb|DR796795.1|DR796795
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|60357858|gb|DN224831.1|DN224831
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: CAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|89764485|gb|DY691273.1|DY691273
genomic: CAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|71304474|gb|DR788354.1|DR788354
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|88752742|gb|DY536883.1|DY536883
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACEST: gi|60356331|gb|DN223304.1|DN223304
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
EST: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATG ACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
genomic: GGGTACAGGATGATAGGGCTCTCTACCTAGATCCCCATGAAGTTCAGATGgtaaacctgc ... tatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCAC
gattgtttagctatatagtaatggtattaatactggaatgttctctatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG
tattaat putative branch site (score: 2)
tgttctct putative PPT
tatatagtaatggtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttttttatcactatgaatacacagttgatggcccaggtgcatgattgtttagctatatagtaatggtattaatactggaatgttctctatgtgtcagACGGTTGACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG