1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaccttttttagcatattcagtttgtattaactagcattatagatttgtctcttcctgtctcttgtttgtaattcccggctgcgcttcttacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTGAAAACGGGGGTGGTGGTGTTGATGACGAGCCTTTGAAGGTACCCATGT
species | Zea mays |
transcript | GRMZM2G063253_T07 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|78108338|gb|DV526756.1|DV526756
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|18173006|gb|BM348394.1|BM348394
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|211497837|gb|FL444530.1|FL444530
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|67025456|gb|CO454205.1|CO454205
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|60356505|gb|DN223478.1|DN223478
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|5325129|gb|AI783320.1|AI783320
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|74244913|gb|DT652827.1|DT652827
genomic: TGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|16921696|gb|BM075250.1|BM075250
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|74242510|gb|DT650424.1|DT650424
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|84980869|gb|DW531218.1|DW531218
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|148995835|gb|EE035070.2|EE035070
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|76915215|gb|DV165885.1|DV165885
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|110524936|gb|EE029120.1|EE029120
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|211526270|gb|FL465597.1|FL465597
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|148955722|gb|EC901413.2|EC901413
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|71431404|gb|DR812454.1|DR812454
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTEST: gi|149108259|gb|EE292600.2|EE292600
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCNNNNNNNTGTTGAAGTCTCCCCACAACAG GTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
genomic: TCTGCACAGTGGAGACCCAGCAAAAAAATGTTGAAGTCTCCCCACAACAGgtaactttct ... tacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTT
tttgtctcttcctgtctcttgtttgtaattcccggctgcgcttcttacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTGAAAACGGGGGTGGTGGTGTTGATGACGAGCCTTTGAAGGTACCCATGT
ttcttac putative branch site (score: 2)
cgcttctt CT-rich tract
tttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaccttttttagcatattcagtttgtattaactagcattatagatttgtctcttcctgtctcttgtttgtaattcccggctgcgcttcttacattgcagGTGAAAGAAAGCGAGGCAGGCCCTTTGATCGCAGACTCTATGAGCAAAGTTGAAAACGGGGGTGGTGGTGTTGATGACGAGCCTTTGAAGGTACCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG