1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tccactccaatccctcaccgatctagtgaccataacagataatctcttcttaatttgttaagatatattgtttatgtttttttacatgctatgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTACAAGCAGAGAGTAGTGCAGCTAGTTAATTCTACCAC
species | Zea mays |
transcript | GRMZM2G062953_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGATGTACTTGCTGAGATGCTGAATGCTTTAGACCCAGGAAACAGAGAG GGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTACEST: gi|20300238|gb|BQ163181.1|BQ163181
genomic: TGGATGTACTTGCTGAGATGCTGAATGCTTTAGACCCAGGAAACAGAGAGgtaccaaagt ... atgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTAC
EST: ACCCAGGAAACAGAG-G GGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTACEST: gi|87153881|gb|DY398670.1|DY398670
genomic: ACCCAGGAAACAGAGAGgtaccaaagt ... atgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTAC
EST: TGGATGTACTTGCTGAGATGCTGAATGCTTTAGACCCAGGAAACAGAGAG GGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTAC
genomic: TGGATGTACTTGCTGAGATGCTGAATGCTTTAGACCCAGGAAACAGAGAGgtaccaaagt ... atgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTAC
cttcttaatttgttaagatatattgtttatgtttttttacatgctatgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTACAAGCAGAGAGTAGTGCAGCTAGTTAATTCTACCAC
tcttaat putative branch site (score: 141)
taatttgttaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccactccaatccctcaccgatctagtgaccataacagataatctcttcttaatttgttaagatatattgtttatgtttttttacatgctatgcacacagGGGCTAAGGCAGGAGGTAATTGTGGAACTTGTGGATCAATGCCGCACTTACAAGCAGAGAGTAGTGCAGCTAGTTAATTCTACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT