Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatgctgtcgcgagctgtactatggttttgttgtggcgtttggttgaaaccacaaatggattaatcttgtttggtgtctgtgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGACACCGAAACGGTTCATCAACGACACCATCAGGAGTGATTTCCACCGTAAA

Basic information

species Zea mays
transcript GRMZM2G062076_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 3'ss of exon 6
gtaggatgctgtcgcgagctgtactatggttttgt-tgtggcgtttg-gttgaaaccacaaatgga-ttaatcttgtttggtgtctgtgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGACACCGAAACGGTTCATCAACGACACCATCAGGAGTGATTTCCACCGTAAA
      |     | |      |  |   || ||   ||   || |    ||   ||     ||| | ||| |  | |    | | | |  | | ||||||||| || || || ||||||||||| || || || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| 
-----gtttacacacagctcatcgtgctgtattacatgcttcgctaatattagcacacttgatgaacttatttctatcctattttttttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211094640|gb|FL030912.1|FL030912
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9824885|gb|BE574982.1|BE574982
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAG
EST: gi|60357821|gb|DN224794.1|DN224794
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14245489|gb|BG874071.1|BG874071
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769623|gb|BQ034344.1|BQ034344
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19822011|gb|BQ048035.1|BQ048035
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|51592965|gb|CV072111.1|CV072111
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|4646735|gb|AI621810.1|AI621810
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGCCGNCGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|166648076|gb|EG229661.1|EG229661
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTCCAGTGTTAAGAGAAG                         GTGGGACGACG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     AACCCGTTGATTA-TATCAATAATGCTGGCTCCTTCAGTGTTAAGAGA-G                         GTGGGACGACGACGTGGTATTCA-GAATCAAGCAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCAC
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     ACCCGTTGATTA-TATCAACAATGCTGGCTCCTTCAGTGTTAAGAAGA-G                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACTA-GA
genomic: ACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGA-GAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGA
EST: gi|4938781|gb|AI691189.1|AI691189
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60341620|gb|DN208593.1|DN208593
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCCCGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|44901479|gb|CK828024.1|CK828024
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37391486|gb|CF632986.1|CF632986
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37397360|gb|CF635977.1|CF635977
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     AACCCGTTGATTAATATCAACAATGCTGGATCCTTCAGTGTTAAGAGAAA                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|29130980|gb|CB381684.1|CB381684
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCCAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769787|gb|BQ034508.1|BQ034508
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCNAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|71318073|gb|DR795798.1|DR795798
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|109637584|gb|EC591129.1|EC591129
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60395043|gb|DN227912.1|DN227912
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|4647277|gb|AI622352.1|AI622352
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTNNNNNNNG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60346299|gb|DN213272.1|DN213272
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14245396|gb|BG873978.1|BG873978
EST:     GTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: GTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60397411|gb|DN230227.1|DN230227
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60352503|gb|DN219476.1|DN219476
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211444750|gb|FL452517.1|FL452517
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60351765|gb|DN218738.1|DN218738
EST:     ACCCGTTGATTAATATCAACAAAAGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: ACCCGTTGATTAATATCAAC-AATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|18178582|gb|BM379792.1|BM379792
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769895|gb|BQ034616.1|BQ034616
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60338997|gb|DN205970.1|DN205970
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     AACCCGGTGATTAATATCAATAATGCTGGCTCCTTCAGTGNTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACC
EST: gi|21891526|gb|BQ744739.1|BQ744739
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22521454|gb|BU080265.1|BU080265
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGGGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAG
EST: gi|37392152|gb|CF633323.1|CF633323
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|17932392|gb|BM269352.1|BM269352
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|21828682|gb|BQ703366.1|BQ703366
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60344935|gb|DN211908.1|DN211908
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094643|gb|FL030915.1|FL030915
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37378126|gb|CF625725.1|CF625725
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|18177522|gb|BM378732.1|BM378732
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|84977485|gb|DW475907.1|DW475907
EST:     TGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: TGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40335334|gb|CK369404.1|CK369404
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|24764934|gb|CA400095.1|CA400095
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22542566|gb|BU093004.1|BU093004
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAG
EST: gi|166588107|gb|EG286626.1|EG286626
EST:     CTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: CTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|5607801|gb|AI901468.1|AI901468
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|16920557|gb|BM074715.1|BM074715
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60394367|gb|DN227237.1|DN227237
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60349874|gb|DN216847.1|DN216847
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211453654|gb|FL478351.1|FL478351
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtttggttgaaaccacaaatggattaatcttgtttggtgtctgtgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGACACCGAAACGGTTCATCAACGACACCATCAGGAGTGATTTCCACCGTAAA
                       gattaat  putative branch site (score: 3)
                                             tgctttcc  putative PPT
                        attaatctt  TA-rich tract