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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttgatgacttcagctgtcacacttttgtagcatgtttttcaatgtttattctgttgctgccgcaccaaacttgaatttctttttttttctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACTTAAAG

Basic information

species Zea mays
transcript GRMZM2G061783_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357389|gb|DN224362.1|DN224362
EST:     ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG                         GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
EST: gi|60353651|gb|DN220624.1|DN220624
EST:     ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG                         GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
EST: gi|50336497|gb|CO531623.1|CO531623
EST:     ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTG                         GTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC
genomic: ACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGTGgtatgatttc ... ctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattctgttgctgccgcaccaaacttgaatttctttttttttctatcttcagGTGTACGGCAGAATGTAAACATCTTGATACATCTGGACGTTAGTAAAGCACTTAAAG
                          cttgaatttctttttt  CT-rich tract
                       aaacttgaatttcttt  TA-rich tract