1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttacattcacaaagacaaaagcatacttctactatcttggatttttttattgcaggttctattatcttttcagtattaccaatgtggggctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
species | Zea mays |
transcript | GRMZM2G061287_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATEST: gi|61118385|gb|DN559346.1|DN559346
genomic: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAGgtggatatct ... ctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
EST: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATEST: gi|32931982|gb|CF036794.1|CF036794
genomic: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAGgtggatatct ... ctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
EST: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAACCCTGATTACATGACCAGTCATCAAGATATAAATEST: gi|60394849|gb|DN227718.1|DN227718
genomic: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAGgtggatatct ... ctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
EST: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATEST: gi|78119998|gb|DV538382.1|DV538382
genomic: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAGgtggatatct ... ctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
EST: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
genomic: CAGCAACAGAATATGTTGAAGAGCTTTACAAGTTTTACAGAGAAAATGAGgtggatatct ... ctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAAT
ttttattgcaggttctattatcttttcagtattaccaatgtggggctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
ttctattatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttacattcacaaagacaaaagcatacttctactatcttggatttttttattgcaggttctattatcttttcagtattaccaatgtggggctttatgcagGCTAAGAGTTGTGTAAACCCTGATTACATGTCCAGTCAGCAAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - cattcac
- - - - - - -agacaaa
- - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - ttgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtg