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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtctctcccaccaattcaggattcagttgttttgccactttcgtgccttgtgaaatagctctaggccctgctattcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGTGGTGATTACAACAAAATAAGCGTGTCTTATCAAACTCAAGTGTTGCAGA

Basic information

species Zea mays
transcript GRMZM2G060870_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060870_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g40890.2 (Oryza sativa), 3'ss of exon 6
gtatggtctctcccaccaattcaggattcagttgttttgccact-----ttcgtgccttgtgaaatagctctaggccctgctattcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGTGGTGATTACA-ACAAAATAAGCGTGTCTTATCAAACTCAAGTGTTGCAGA-
|||||| ||||| ||    || | |  | |||  ||| | |  |     |  |   ||  ||  ||  ||      | | |||||||||||||| || ||||| ||||||||| |||||||||| ||  ||    ||| | |     |||||  ||| ||||| | ||||||| |   || | |   |  ||  
gtatggcctctcacatt--ttgaaggcttagtcctttagtctgtaattgtctgattctaatgtgatgtcttcca-tcatactattcttgcagGCCAGTGTTGGACTTGATGATCTGAAGGCTTCTTAATGCA--TTCCTATGCAACAATTACCCACAGAATAAACCTGTCTTACCTGTCTAATGAAATTTAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934286|gb|CF039098.1|CF039098
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAA-TCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32932161|gb|CF036973.1|CF036973
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32866744|gb|CF006426.1|CF006426
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32934643|gb|CF039455.1|CF039455
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32930749|gb|CF035561.1|CF035561
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|45567822|gb|CK985763.1|CK985763
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|60346084|gb|DN213057.1|DN213057
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|211296158|gb|FL473352.1|FL473352
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|17932440|gb|BM269400.1|BM269400
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|6056907|gb|AW091312.1|AW091312
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|60401114|gb|DN233921.1|DN233921
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|5686769|gb|AI939862.1|AI939862
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|84351358|gb|DW245763.1|DW245763
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCCCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|22542222|gb|BU092660.1|BU092660
EST:     ATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAAATCACGAGTTTCTG                         GCGAGCGTTGGCCTTGATGATATGAAGGC
genomic: ATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAA-TCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGC
EST: gi|60401080|gb|DN233887.1|DN233887
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32932571|gb|CF037383.1|CF037383
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32932862|gb|CF037674.1|CF037674
EST:     CTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: CTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|71770686|gb|DR968623.1|DR968623
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32840612|gb|CD980293.1|CD980293
EST:     ATTTTGCAC-AGCCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: ATTTTGCACGA-CCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32935206|gb|CF040018.1|CF040018
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCCCGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|60399775|gb|DN232585.1|DN232585
EST:     AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|211375011|gb|FL430792.1|FL430792
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|211296159|gb|FL473353.1|FL473353
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32932100|gb|CF036912.1|CF036912
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|211365280|gb|FL463922.1|FL463922
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
EST: gi|32867861|gb|CF007543.1|CF007543
EST:     AATTTTGCACAACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTG                         GCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT
genomic: AATTTTGCACGACCTTCTCTCCTTTTCTCAAAGAAAATCACGAGTTTCTGgtatggtctc ... attcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgccactttcgtgccttgtgaaatagctctaggccctgctattcttgcagGCGAGCGTTGGTCTTGATGATATGAAGGCTTCGTAGAGCGATCTCCAAGGTGGTGATTACAACAAAATAAGCGTGTCTTATCAAACTCAAGTGTTGCAGA
                                           ctattctt  CT-rich tract
                       tgaaata  TA-rich tract