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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcacgaatgctgtatcatgctactttagattatgcttttggtcagtggacaaggttcttatctacgccacctcgttctgcagattggcgattatctgagcgtcgcgatcatgtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAGTTCCGGTGACTGCACCGGATAGAACTGATGTGATGTAAAAAATGCATTG

Basic information

species Zea mays
transcript GRMZM2G060669_T04
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211273990|gb|FL433152.1|FL433152
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|60394770|gb|DN227640.1|DN227640
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|20802865|gb|BQ293915.1|BQ293915
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAATCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|5608402|gb|AI901979.1|AI901979
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAATCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|26456474|gb|CA828057.1|CA828057
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAATCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|37395737|gb|CF635151.1|CF635151
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
EST: gi|166621987|gb|EG271359.1|EG271359
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGACGATCA
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCG-CGATCA
EST: gi|44901460|gb|CK828005.1|CK828005
EST:     GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAG                         ATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG
genomic: GCCATGGAAGAGGTGATGATGCCAAAACTCTTGCAGAGCTTGGGTTCCAGgtctgcacga ... gtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacctcgttctgcagattggcgattatctgagcgtcgcgatcatgtaactgcagATTGGCGATTACCTGAGCGTCGCGATCATGTAAGCCGGTGCCCGCAATGAGTTCCGGTGACTGCACCGGATAGAACTGATGTGATGTAAAAAATGCATTG
                                           atgtaac  putative branch site (score: 3)
                       attatct  TA-rich tract