Sequence
atgc intronic sequence ATGC exonic sequence...tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaacataatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G060611_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 3'ss of exon 1
tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaacataatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
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tagtaataggaagctatgataatgaagccgtagcaatactgaatccacattccacattacacttcttttccacactcaaatcacacatcatttattacagGTTCCCTCATACATCTCAAGATCCGTTGCAGGAAGCTATGATAATGAAGCCGTAGCAATATTTGCTTTGATATTCACATTTTATCTATATGTAAAG
upper sequence: GRMZM2G060611_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 6
------tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaacataatattgatcag-aatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
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tggtaatagttactctcttctaatattatttggttgctggtccttgacgtccctcttatat-----gtaattcatcctgaatccttaataatcttgtgtcttc--agGTCCCTTCATATATATCTCGATCAGTGGCTGGCAGCTACGACAATGAAGCTGTTGCTATATTTGCTTTGATATTCACTTTCTATCTCTATATTAAG
upper sequence: GRMZM2G060611_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 6
------tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaacataatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
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attcagcattggtgcattgtttactggaatttaccacaaaattttattgatgtgtttctttagagtgttagttctttttact--gaatggtt----acttttgcagGTTCCCTCATATATATCCCGATCTGTAGCTGGTAGCTATGACAATGAAGCTGTTGCCATCTTTGCTTTGATCTTCACTTTTTATCTTTACATAAAG
upper sequence: GRMZM2G060611_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 6
tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaaca--taatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
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--gtatggaaaatgatgttgaccattactatcaatgatagttctctacaaaacgtgattaataaaacctaatattagttctcttttatgttcttgttttcagGTACCATCATACATATCCCGATCTGTGGCTGGTAGCTATGATAATGAAGCTGTGGCTATATTTGCTCTGATCTTCACTTTCTATCTTTATATTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccatactctcctcgtaacataatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
taacataatattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactctcccacttcttagtacattgtattatctatgtatgtagtcttccatactctcctcgtaacataatattgatcagaatgctctcgaatcatcacagGTCCCCTCATATATTTCAAGATCTGTTGCAGGCAGCTATGATAATGAAGCTGTAGCAATATTTGCCTTGATATTTACATTTTATCTATATGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG