1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtcgtgcagtgccagtgcctggcctatactagctaaacattcatgcatgcaatgtctgttccattcccggcggctaactaaccaccaccgacgaccttaattattcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAACGTCGAGGTCTACTGATCCATCCTTCCGTTGACGACTGCGGAGATCAA
species | Zea mays |
transcript | GRMZM2G059191_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|16378028|gb|BI992251.1|BI992251
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71762625|gb|DR960562.1|DR960562
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|12968161|gb|BG265108.1|BG265108
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71432261|gb|DR813311.1|DR813311
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|149073444|gb|EE161749.2|EE161749
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCACCCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71297722|gb|DR784813.1|DR784813
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71763164|gb|DR961101.1|DR961101
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|149073700|gb|EE162006.2|EE162006
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|13381738|gb|BG458293.1|BG458293
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAEST: gi|71445675|gb|DR826725.1|DR826725
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71306720|gb|DR789520.1|DR789520
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|148962439|gb|EE013294.2|EE013294
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGGGAGCAATGGAEST: gi|91876931|gb|EB406888.1|EB406888
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|76019472|gb|DT946642.1|DT946642
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71313358|gb|DR793225.1|DR793225
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|94475953|gb|EB704911.1|EB704911
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATGGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATGGACTGGATGCAGTCCAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|86470786|gb|DY237156.1|DY237156
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGTTCAAGAAGGGCGAGCAATGGAEST: gi|71436411|gb|DR817461.1|DR817461
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|4730332|gb|AI649498.1|AI649498
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|89248692|gb|DY620478.1|DY620478
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71307167|gb|DR789753.1|DR789753
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|76283319|gb|DV022887.1|DV022887
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|5928946|gb|AW056238.1|AW056238
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|78076893|gb|DV505327.1|DV505327
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|32850019|gb|CD989700.1|CD989700
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAAACTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71326435|gb|DR799900.1|DR799900
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71445674|gb|DR826724.1|DR826724
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|71428874|gb|DR809924.1|DR809924
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|78022623|gb|DV491010.1|DV491010
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: ACATCATGCTCAACCTTGCAGCCAAGGACG GGATTGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|13125967|gb|BG316642.1|BG316642
genomic: ACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAEST: gi|16920157|gb|BM074528.1|BM074528
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCGACCTTGCAGCCAAGGACG GGATCGTCTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|94479916|gb|EB708874.1|EB708874
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAEST: gi|110219228|gb|EC901126.1|EC901126
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
EST: CATGGAGAAGGGCATTGACGACATCATGTTCAACCTTGCAGCCAAGGACG GGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGGGAGCAATGGA
genomic: CATGGAGAAGGGCATCGACGACATCATGCTCAACCTTGCAGCCAAGGACGgtacgtcgtg ... attcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGA
gttccattcccggcggctaactaaccaccaccgacgaccttaattattcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAACGTCGAGGTCTACTGATCCATCCTTCCGTTGACGACTGCGGAGATCAA
ttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcgtgcagtgccagtgcctggcctatactagctaaacattcatgcatgcaatgtctgttccattcccggcggctaactaaccaccaccgacgaccttaattattcgatcagGGATCGACTGGATGCAGTACAAGAAGCAGCTCAAGAAGGGCGAGCAATGGAACGTCGAGGTCTACTGATCCATCCTTCCGTTGACGACTGCGGAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
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