1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttctcatgactgggaattatatgtttatctgtactttccaagttttgtgatgatcatttgttgcttggcctttaagcatttactgttctgattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTTTCTGTGTTATTGTTCCAG
species | Zea mays |
transcript | GRMZM2G058948_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAA GTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTTEST: gi|32824390|gb|CD964112.1|CD964112
genomic: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAAgtacttcctt ... gattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTT
EST: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAA GTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTTEST: gi|74240304|gb|DT648218.1|DT648218
genomic: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAAgtacttcctt ... gattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTT
EST: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAA GTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTT
genomic: TTGTTGTTGGGAGTGGCTTGGCTCTGTCATCCACGGCTGTTGTCTTGCAAgtacttcctt ... gattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTT
ttgtgatgatcatttgttgcttggcctttaagcatttactgttctgattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTTTCTGTGTTATTGTTCCAG
ttctgat putative branch site (score: 132)
ttttct CT-rich tract
attttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcatgactgggaattatatgtttatctgtactttccaagttttgtgatgatcatttgttgcttggcctttaagcatttactgttctgattttctagGTATTGCAAGAGCGTGGTGAAAGTACGTCGCGTCATGGACGTGCCACATTTTCTGTGTTATTGTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct