1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagaggtgcctcaaagttcccatttataaagtttcaccttttctataggctcaatgttgattgtgtatgctcttttcgttaatatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATGTCCCAGGTGGCACTGCAGTCTTGCCTTCAACTGCATTGATGCTTGCTG
species | Zea mays |
transcript | GRMZM2G058584_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATEST: gi|71774596|gb|DR972474.1|DR972474
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATEST: gi|76012899|gb|DT940069.1|DT940069
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATEST: gi|37422448|gb|CF648934.1|CF648934
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATEST: gi|211215840|gb|FL096753.1|FL096753
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATEST: gi|211320051|gb|FL096754.1|FL096754
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
EST: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAA GGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
genomic: CCTTCCATGTTTCACAAAAAATACCTGAGAAGACAGTTGAAAATATGAAAgtaagaggtg ... atatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTAT
ccttttctataggctcaatgttgattgtgtatgctcttttcgttaatatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATGTCCCAGGTGGCACTGCAGTCTTGCCTTCAACTGCATTGATGCTTGCTG
cgttaat putative branch site (score: 4)
ttaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaggtgcctcaaagttcccatttataaagtttcaccttttctataggctcaatgttgattgtgtatgctcttttcgttaatatgtgaagGGCGTAAGATGTAAGAGAATAACTAGATGCATTGGTTCTGTTGGGCTGTATGTCCCAGGTGGCACTGCAGTCTTGCCTTCAACTGCATTGATGCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG