1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtaaaggataccatccaaaataatcgtactgagtctcatagagttatttttaaagaacgagaactgattttgtttgcatccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAAGTTCTAGCCAGGAGAAGGATCCAGTGGCTAAGACTATACTGAACAAGG
species | Zea mays |
transcript | GRMZM2G058343_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|61119245|gb|DN560206.1|DN560206
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|76280369|gb|DV019937.1|DV019937
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|148948065|gb|EC893569.2|EC893569
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|87152863|gb|DY397652.1|DY397652
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|19058188|gb|BM736855.1|BM736855
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|71449825|gb|DR830875.1|DR830875
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAEST: gi|32936866|gb|CF041685.1|CF041685
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
EST: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAG GAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
genomic: ACAACGATTCCTTTACTGTTAAGAGAATCTCTGATCTACAGGCTTCAAAGgttagtaaag ... ccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCA
ctcatagagttatttttaaagaacgagaactgattttgtttgcatccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAAGTTCTAGCCAGGAGAAGGATCCAGTGGCTAAGACTATACTGAACAAGG
aactgat putative branch site (score: 3)
tccatcttc putative PPT
agttatttttaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaaaggataccatccaaaataatcgtactgagtctcatagagttatttttaaagaacgagaactgattttgtttgcatccatcttcagGAAAGTCCAGCAAGGGCTGTTGCTAGCGATAAGGGTACCCCTGTACCCTCAAGTTCTAGCCAGGAGAAGGATCCAGTGGCTAAGACTATACTGAACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA