1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaactgtttcttaaatgtctgtttcaatgtagcagttaatctttttccccttttacaatactgatatgcttctatttcctttggtgtgctctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCATATAGGTTTGAACGCTGATGCTGATGGCGGACCTTCGACGCAGAACGTT
species | Zea mays |
transcript | GRMZM2G057853_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGCGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|148930898|gb|EC873352.2|EC873352
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTTGCA-TCTGGCEST: gi|93012339|gb|EB637859.1|EB637859
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATT-GCAATCTGGC
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGAATATCGCAGTTTGCA-CCTGCAAAGGAAEST: gi|50328004|gb|CO523130.1|CO523130
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTT-GCAACCTGCAAAGGAA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|76294071|gb|DV033639.1|DV033639
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTTACATTGGCAG AACATATGAGATTATCGCAGGTGCACCCTGCAAAGGAATTGCCAATCTGGCEST: gi|78080510|gb|DV508922.1|DV508922
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGC-AATCTGGC
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGGAATTGCA-TCTGGCEST: gi|76909537|gb|DV163411.1|DV163411
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGG-AATTGCAATCTGGC
EST: ATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCCTA-CATTGGCAG ACCATATGAGATTATCGCAGTTGCACCCTGCAAAGGAATTGCAATCTGGCAEST: gi|71772782|gb|DR970707.1|DR970707
genomic: ATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCC-TAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ATCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|71444110|gb|DR825160.1|DR825160
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCTACCTGCTAAGGAATTGCAATCTGGCAEST: gi|149107563|gb|EE189446.2|EE189446
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATTTGGCAEST: gi|71773952|gb|DR971840.1|DR971840
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|149107564|gb|EE189447.2|EE189447
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTACCATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|148981980|gb|EE028040.2|EE028040
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|71439594|gb|DR820644.1|DR820644
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAEST: gi|211023881|gb|FL345725.1|FL345725
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|149074196|gb|EE162559.2|EE162559
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAAATGCAATCTGGCAEST: gi|84976699|gb|DW475121.1|DW475121
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|71429467|gb|DR810517.1|DR810517
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|148953594|gb|EC898948.2|EC898948
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|60353460|gb|DN220433.1|DN220433
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCAEST: gi|76283890|gb|DV023458.1|DV023458
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
EST: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAG ACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
genomic: GATACAGGAGATAAAGTGTGTGCTGTAGCATGGGCTCCTAACATTGGCAGgtattcctgt ... tctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCA
ttccccttttacaatactgatatgcttctatttcctttggtgtgctctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCATATAGGTTTGAACGCTGATGCTGATGGCGGACCTTCGACGCAGAACGTT
tactgat putative branch site (score: 30)
ctctattct putative PPT
ttttacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaactgtttcttaaatgtctgtttcaatgtagcagttaatctttttccccttttacaatactgatatgcttctatttcctttggtgtgctctattctagACCATATGAGATTATCGCAGTTGCAACCTGCAAAGGAATTGCAATCTGGCATATAGGTTTGAACGCTGATGCTGATGGCGGACCTTCGACGCAGAACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -tgtttct
- - - - - - - - - - tgtttca
- - - - - - - - - - - - - - -gtagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg