1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggatgtcacgcagagcagttccgccgattagttttaccatagtttgcgagatctgatctgttgaaaatgttaggactttcattgcacttgacctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCGCTTCTAATGCATTTGTCATG
species | Zea mays |
transcript | GRMZM2G057504_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAGGGAGAAAGTTATAAAGGAGTTCTCAGAGGACAAAGGCATTTTG GTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCEST: gi|4967130|gb|AI691852.1|AI691852
genomic: AGCAAAGGGAGAAAGTTATAAAGGAGTTCTCAGAGGACAAAGGCATTTTGgtatttcttc ... acctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCC
EST: GTTCTCAGAGGACAAAGGCATTTTG GTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCEST: gi|6095363|gb|AW120030.1|AW120030
genomic: GTTCTCAGAGGACAAAGGCATTTTGgtatttcttc ... acctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCC
EST: AGAGGACAAAGGCATTTTG GTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCEST: gi|67013128|gb|CO441877.1|CO441877
genomic: AGAGGACAAAGGCATTTTGgtatttcttc ... acctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCC
EST: AGCAAAGGGAGAAAGTTATAAAGGAGTTCTCAGAGGACAAAGGCATTTTG GTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCC
genomic: AGCAAAGGGAGAAAGTTATAAAGGAGTTCTCAGAGGACAAAGGCATTTTGgtatttcttc ... acctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCC
gcgagatctgatctgttgaaaatgttaggactttcattgcacttgacctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCGCTTCTAATGCATTTGTCATG
acttgac putative branch site (score: 78)
aaaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgtcacgcagagcagttccgccgattagttttaccatagtttgcgagatctgatctgttgaaaatgttaggactttcattgcacttgacctatgcagGTTCTGCTTATGTCTCTGAAGGCTGGAGGTGTTGGAATCAATCTTACTGCCGCTTCTAATGCATTTGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - cacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacttg